Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 SNRPGP15-201ENST00000600149 222 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC008638.3-201ENST00000603341 463 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 SRGNP1-201ENST00000603392 451 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 Z98200.1-201ENST00000607298 470 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AL513477.2-201ENST00000607858 568 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC103710.3-201ENST00000608157 948 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AL360219.1-201ENST00000610230 366 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AL133243.1-201ENST00000614487 366 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC090116.1-201ENST00000615679 446 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 MIR6891-201ENST00000618788 93 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 Z99129.2-201ENST00000619967 314 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 MFSD8-242ENST00000641690 4199 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL390862.1-201ENST00000635467 1469 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 OR5H2-201ENST00000355273 945 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RNU6-263P-201ENST00000363811 107 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 SNORD74.4-201ENST00000364129 80 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 Y_RNA.560-201ENST00000384689 102 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 MIR506-201ENST00000384998 124 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 MIR513A2-201ENST00000385249 127 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 MT-TC-201ENST00000387405 66 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL049545.1-201ENST00000401856 572 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RNU4-72P-201ENST00000410754 173 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC107081.1-201ENST00000414975 361 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 GOT2P5-201ENST00000433995 546 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL117351.1-201ENST00000438864 766 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 MTND2P20-201ENST00000440805 661 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 MTCYBP11-201ENST00000447254 1109 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RSL24D1P3-201ENST00000449255 495 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 TRGVB-201ENST00000453257 471 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RPL7P22-201ENST00000466005 733 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RPS15AP17-201ENST00000470598 390 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL132838.2-201ENST00000492041 314 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC118465.1-201ENST00000513820 1271 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC087373.1-201ENST00000524920 491 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AP000827.1-201ENST00000527814 258 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 ZNF415P1-201ENST00000582279 1166 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AC011471.1-201ENST00000585766 187 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 VN1R90P-201ENST00000595717 726 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL133338.2-201ENST00000604292 736 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL163642.2-201ENST00000604722 1019 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL160290.3-201ENST00000604869 165 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 AL354976.1-201ENST00000613843 387 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 MIR3653-201ENST00000625572 110 ntBASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
PDLIM3Q53GG5 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms