Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-921P-201ENST00000384361 107 ntBASIC4.47□□□□□ -1.69
CTCFP49711 RNU6-441P-201ENST00000384545 106 ntBASIC4.47□□□□□ -1.69
CTCFP49711 SNORD66.1-201ENST00000391230 76 ntBASIC4.47□□□□□ -1.69
CTCFP49711 HMGB1P49-201ENST00000418882 569 ntBASIC4.47□□□□□ -1.69
CTCFP49711 MRPS36P1-201ENST00000421291 307 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.47□□□□□ -1.69
CTCFP49711 AC005345.1-201ENST00000431868 217 ntBASIC4.47□□□□□ -1.69
CTCFP49711 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 AC127537.2-201ENST00000439258 465 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.47□□□□□ -1.69
CTCFP49711 AL034418.1-201ENST00000448675 860 ntBASIC4.47□□□□□ -1.69
CTCFP49711 RPL29P29-201ENST00000448725 423 ntBASIC4.47□□□□□ -1.69
CTCFP49711 BX276092.4-201ENST00000452056 248 ntBASIC4.47□□□□□ -1.69
CTCFP49711 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 AC023141.12-201ENST00000512399 199 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC010342.1-201ENST00000514047 877 ntBASIC4.47□□□□□ -1.69
CTCFP49711 SNORA48.10-201ENST00000516965 160 ntBASIC4.47□□□□□ -1.69
CTCFP49711 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.47□□□□□ -1.69
CTCFP49711 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.47□□□□□ -1.69
CTCFP49711 MTCYBP28-201ENST00000566728 1132 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC074051.3-201ENST00000570238 358 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC022662.1-201ENST00000580252 331 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC087683.2-201ENST00000611384 326 ntBASIC4.47□□□□□ -1.69
CTCFP49711 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 AC022509.4-201ENST00000621404 572 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC073348.1-201ENST00000623002 331 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC026634.1-201ENST00000634369 198 ntBASIC4.47□□□□□ -1.69
CTCFP49711 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 MTND5P28-201ENST00000438005 1594 ntBASIC4.47□□□□□ -1.69
CTCFP49711 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.47□□□□□ -1.69
CTCFP49711 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.47□□□□□ -1.69
CTCFP49711 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CTCFP49711 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
CTCFP49711 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
CTCFP49711 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
CTCFP49711 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
CTCFP49711 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.46□□□□□ -1.7
CTCFP49711 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.46□□□□□ -1.7
CTCFP49711 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 MTCO1P14-201ENST00000441695 1559 ntBASIC4.46□□□□□ -1.7
CTCFP49711 ZNF876P-202ENST00000398732 1485 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC095050.2-201ENST00000510748 1458 ntBASIC4.46□□□□□ -1.7
CTCFP49711 RNU6-492P-201ENST00000363035 104 ntBASIC4.46□□□□□ -1.7
CTCFP49711 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.46□□□□□ -1.7
CTCFP49711 Y_RNA.408-201ENST00000383987 102 ntBASIC4.46□□□□□ -1.7
CTCFP49711 RNU6-356P-201ENST00000384140 107 ntBASIC4.46□□□□□ -1.7
CTCFP49711 MIR153-1-201ENST00000384914 90 ntBASIC4.46□□□□□ -1.7
CTCFP49711 SNORA3C-201ENST00000408792 125 ntBASIC4.46□□□□□ -1.7
CTCFP49711 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.46□□□□□ -1.7
CTCFP49711 RNA5SP80-201ENST00000410475 111 ntBASIC4.46□□□□□ -1.7
CTCFP49711 RPS24P7-201ENST00000416921 246 ntBASIC4.46□□□□□ -1.7
CTCFP49711 RPS3AP9-201ENST00000417027 792 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AL161631.1-201ENST00000417933 486 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC092832.1-201ENST00000422934 400 ntBASIC4.46□□□□□ -1.7
CTCFP49711 CYCSP4-201ENST00000429682 331 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.46□□□□□ -1.7
CTCFP49711 AC241584.1-201ENST00000438469 1241 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.46□□□□□ -1.7
CTCFP49711 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.46□□□□□ -1.7
CTCFP49711 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.46□□□□□ -1.7
CTCFP49711 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.46□□□□□ -1.7
CTCFP49711 RAD23BP3-201ENST00000454157 1152 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC087879.1-201ENST00000474343 374 ntBASIC4.46□□□□□ -1.7
CTCFP49711 BNIP3P41-201ENST00000503774 571 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC091951.3-201ENST00000504093 246 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.46□□□□□ -1.7
CTCFP49711 RNU6-1225P-201ENST00000516336 65 ntBASIC4.46□□□□□ -1.7
CTCFP49711 RN7SKP31-201ENST00000516354 278 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.46□□□□□ -1.7
CTCFP49711 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTCFP49711 AC009097.3-201ENST00000563557 1018 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC061975.8-201ENST00000587058 721 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.46□□□□□ -1.7
CTCFP49711 GAS5-AS1-201ENST00000602767 694 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC009159.2-201ENST00000617603 606 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC233309.1-201ENST00000619522 751 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC103858.2-201ENST00000621471 543 ntBASIC4.46□□□□□ -1.7
CTCFP49711 C2orf27A-204ENST00000623058 969 ntBASIC4.46□□□□□ -1.7
CTCFP49711 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.46□□□□□ -1.7
CTCFP49711 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.46□□□□□ -1.7
CTCFP49711 AC068620.4-201ENST00000636730 1182 ntBASIC4.46□□□□□ -1.7
CTCFP49711 MKKS-204ENST00000639674 192 ntBASIC4.46□□□□□ -1.7
CTCFP49711 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.46□□□□□ -1.7
CTCFP49711 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms