Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC008966.2-201ENST00000606157 453 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC022467.1-201ENST00000614738 749 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC002550.2-201ENST00000621246 394 ntBASIC4.66□□□□□ -1.66
MSX2P35548 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.66□□□□□ -1.66
MSX2P35548 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.66□□□□□ -1.66
MSX2P35548 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.66□□□□□ -1.66
MSX2P35548 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.66□□□□□ -1.66
MSX2P35548 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
MSX2P35548 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX2P35548 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX2P35548 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.66□□□□□ -1.66
MSX2P35548 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
MSX2P35548 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
MSX2P35548 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.65□□□□□ -1.66
MSX2P35548 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.65□□□□□ -1.66
MSX2P35548 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSX2P35548 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSX2P35548 Y_RNA.58-201ENST00000362807 102 ntBASIC4.65□□□□□ -1.67
MSX2P35548 Y_RNA.154-201ENST00000363624 102 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RNU4-1-201ENST00000363925 141 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RNY3P1-201ENST00000365085 102 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RNY3-201ENST00000365484 102 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RNU6-921P-201ENST00000384361 107 ntBASIC4.65□□□□□ -1.67
MSX2P35548 Y_RNA.490-201ENST00000384413 102 ntBASIC4.65□□□□□ -1.67
MSX2P35548 MIR195-201ENST00000385194 87 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.65□□□□□ -1.67
MSX2P35548 EIF4A1P3-201ENST00000411521 244 ntBASIC4.65□□□□□ -1.67
MSX2P35548 PRELID3BP11-201ENST00000414230 479 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 MRPL50P2-201ENST00000416821 482 ntBASIC4.65□□□□□ -1.67
MSX2P35548 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSX2P35548 AL606489.2-201ENST00000433886 234 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 CYCSP12-201ENST00000437729 300 ntBASIC4.65□□□□□ -1.67
MSX2P35548 FAM103A2P-201ENST00000444122 354 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC002381.1-201ENST00000447049 280 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AL136380.1-201ENST00000447970 162 ntBASIC4.65□□□□□ -1.67
MSX2P35548 TCEA1P1-201ENST00000449716 880 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RPL7P22-201ENST00000466005 733 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AL133445.1-201ENST00000467051 452 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC010301.1-201ENST00000473936 355 ntBASIC4.65□□□□□ -1.67
MSX2P35548 NIP7P2-201ENST00000485801 544 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 AL136038.1-201ENST00000497246 351 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.65□□□□□ -1.67
MSX2P35548 SNORD116-26-201ENST00000516006 96 ntBASIC4.65□□□□□ -1.67
MSX2P35548 RNU6-714P-201ENST00000516963 103 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC105029.1-201ENST00000520250 669 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 OR5B19P-201ENST00000531766 928 ntBASIC4.65□□□□□ -1.67
MSX2P35548 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 AC090022.1-201ENST00000546569 311 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.65□□□□□ -1.67
MSX2P35548 AC037471.2-201ENST00000564941 598 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 MIR3167-201ENST00000579623 85 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 AC069307.1-201ENST00000602820 447 ntBASIC4.65□□□□□ -1.67
MSX2P35548 FO393422.1-201ENST00000603908 708 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC011468.4-201ENST00000603942 409 ntBASIC4.65□□□□□ -1.67
MSX2P35548 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 BX664608.1-201ENST00000610519 487 ntBASIC4.65□□□□□ -1.67
MSX2P35548 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX2P35548 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 AC007529.1-201ENST00000418574 2178 ntBASIC4.65□□□□□ -1.67
MSX2P35548 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX2P35548 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSX2P35548 AC092435.4-201ENST00000623012 4159 ntBASIC4.64□□□□□ -1.67
MSX2P35548 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.64□□□□□ -1.67
MSX2P35548 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSX2P35548 KPNA2P2-201ENST00000419546 1489 ntBASIC4.64□□□□□ -1.67
MSX2P35548 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.64□□□□□ -1.67
MSX2P35548 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.64□□□□□ -1.67
MSX2P35548 DDX18P3-201ENST00000404856 2007 ntBASIC4.64□□□□□ -1.67
MSX2P35548 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
MSX2P35548 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
MSX2P35548 SNORA69-201ENST00000383895 132 ntBASIC4.64□□□□□ -1.67
MSX2P35548 Y_RNA.419-201ENST00000384041 102 ntBASIC4.64□□□□□ -1.67
MSX2P35548 PRRC2CP1-201ENST00000404428 159 ntBASIC4.64□□□□□ -1.67
MSX2P35548 BTBD10P2-201ENST00000404779 676 ntBASIC4.64□□□□□ -1.67
MSX2P35548 RN7SKP114-201ENST00000410327 279 ntBASIC4.64□□□□□ -1.67
MSX2P35548 AC078974.1-201ENST00000411597 223 ntBASIC4.64□□□□□ -1.67
MSX2P35548 SNRPFP1-201ENST00000414761 252 ntBASIC4.64□□□□□ -1.67
MSX2P35548 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.64□□□□□ -1.67
MSX2P35548 MTCO2P5-201ENST00000422621 426 ntBASIC4.64□□□□□ -1.67
MSX2P35548 RPS27P18-201ENST00000431701 247 ntBASIC4.64□□□□□ -1.67
MSX2P35548 RPL36AP53-201ENST00000432891 316 ntBASIC4.64□□□□□ -1.67
MSX2P35548 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.64□□□□□ -1.67
MSX2P35548 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.64□□□□□ -1.67
MSX2P35548 RPL36AP15-201ENST00000444514 266 ntBASIC4.64□□□□□ -1.67
MSX2P35548 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms