Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL670379.7-201ENST00000605823 252 ntBASIC5.68□□□□□ -1.5
MSX1P28360 AL161637.1-201ENST00000622380 412 ntBASIC5.68□□□□□ -1.5
MSX1P28360 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX1P28360 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
MSX1P28360 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSX1P28360 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSX1P28360 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX1P28360 SHQ1P1-201ENST00000437111 1544 ntBASIC5.68□□□□□ -1.5
MSX1P28360 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSX1P28360 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.68□□□□□ -1.5
MSX1P28360 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.67□□□□□ -1.5
MSX1P28360 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX1P28360 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
MSX1P28360 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
MSX1P28360 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
MSX1P28360 Y_RNA.19-201ENST00000362462 99 ntBASIC5.67□□□□□ -1.5
MSX1P28360 Y_RNA.20-201ENST00000362479 113 ntBASIC5.67□□□□□ -1.5
MSX1P28360 RNU6-774P-201ENST00000363238 107 ntBASIC5.67□□□□□ -1.5
MSX1P28360 RNA5SP391-201ENST00000363456 119 ntBASIC5.67□□□□□ -1.5
MSX1P28360 RNU4-42P-201ENST00000364738 142 ntBASIC5.67□□□□□ -1.5
MSX1P28360 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
MSX1P28360 Y_RNA.577-201ENST00000384794 101 ntBASIC5.67□□□□□ -1.5
MSX1P28360 MIR92A2-201ENST00000385299 75 ntBASIC5.67□□□□□ -1.5
MSX1P28360 AC116036.1-201ENST00000412199 367 ntBASIC5.67□□□□□ -1.5
MSX1P28360 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.67□□□□□ -1.5
MSX1P28360 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
MSX1P28360 AC084198.1-201ENST00000477747 402 ntBASIC5.67□□□□□ -1.5
MSX1P28360 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX1P28360 RPL12P30-201ENST00000488389 499 ntBASIC5.67□□□□□ -1.5
MSX1P28360 RPL17P19-201ENST00000489069 552 ntBASIC5.67□□□□□ -1.5
MSX1P28360 SCARNA21.2-201ENST00000516600 166 ntBASIC5.67□□□□□ -1.5
MSX1P28360 AC100870.1-201ENST00000522035 505 ntBASIC5.67□□□□□ -1.5
MSX1P28360 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.67□□□□□ -1.5
MSX1P28360 AC036111.2-201ENST00000533247 901 ntBASIC5.67□□□□□ -1.5
MSX1P28360 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.67□□□□□ -1.5
MSX1P28360 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.67□□□□□ -1.5
MSX1P28360 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 MIR4701-201ENST00000583094 63 ntBASIC5.67□□□□□ -1.5
MSX1P28360 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX1P28360 AC009779.6-201ENST00000603972 165 ntBASIC5.67□□□□□ -1.5
MSX1P28360 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX1P28360 AC024884.1-201ENST00000620583 399 ntBASIC5.67□□□□□ -1.5
MSX1P28360 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
MSX1P28360 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX1P28360 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX1P28360 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
MSX1P28360 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX1P28360 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
MSX1P28360 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX1P28360 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 OLMALINC-203ENST00000641087 3779 ntBASIC5.66□□□□□ -1.5
MSX1P28360 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 Y_RNA.29-201ENST00000362570 113 ntBASIC5.66□□□□□ -1.5
MSX1P28360 Y_RNA.270-201ENST00000364693 104 ntBASIC5.66□□□□□ -1.5
MSX1P28360 SNORA43.1-201ENST00000364863 140 ntBASIC5.66□□□□□ -1.5
MSX1P28360 Y_RNA.526-201ENST00000384572 110 ntBASIC5.66□□□□□ -1.5
MSX1P28360 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
MSX1P28360 RN7SKP206-201ENST00000410823 293 ntBASIC5.66□□□□□ -1.5
MSX1P28360 RNU2-22P-201ENST00000411266 212 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL031736.2-201ENST00000426573 787 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL158071.1-201ENST00000430315 461 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX1P28360 Z95327.1-201ENST00000446082 482 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 FCF1P4-201ENST00000448326 183 ntBASIC5.66□□□□□ -1.5
MSX1P28360 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX1P28360 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX1P28360 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX1P28360 RN7SKP35-201ENST00000517210 151 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.66□□□□□ -1.5
MSX1P28360 AP001922.4-201ENST00000526967 290 ntBASIC5.66□□□□□ -1.5
MSX1P28360 DEFB108D-201ENST00000527787 222 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AC092470.1-201ENST00000546187 132 ntBASIC5.66□□□□□ -1.5
MSX1P28360 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX1P28360 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX1P28360 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX1P28360 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX1P28360 OR4H6P-201ENST00000563771 921 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AC109446.1-201ENST00000566172 220 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms