Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC073346.2-201ENST00000624724 2058 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
HOXD4P09016 Y_RNA.192-201ENST00000363977 102 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 RNA5SP72-201ENST00000364442 117 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 Y_RNA.465-201ENST00000384293 102 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 MIR124-3-201ENST00000384866 87 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 EI24P2-201ENST00000397776 1076 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 PRRC2CP1-201ENST00000404428 159 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 RNU2-21P-201ENST00000410368 188 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC069218.2-201ENST00000411665 344 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 MTND4P22-201ENST00000413116 1169 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC004987.3-201ENST00000413879 771 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 SYF2P2-201ENST00000417620 583 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 GTF2IP23-201ENST00000423746 351 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC091390.3-201ENST00000426478 338 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD4P09016 HMGN2P31-201ENST00000432430 273 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD4P09016 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 MTND2P22-201ENST00000444325 1033 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 RANP8-201ENST00000444720 713 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 COX6CP18-201ENST00000448769 222 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 PPIAP3-201ENST00000450588 505 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 SNORD108-201ENST00000459332 71 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD4P09016 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 UBE2CP3-201ENST00000502715 450 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC108941.1-201ENST00000502853 530 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 DYNLL1P6-201ENST00000503440 264 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 AC010486.2-201ENST00000505572 483 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 RPL7L1P13-201ENST00000511702 739 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD4P09016 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC093755.1-201ENST00000512950 1023 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC008837.2-201ENST00000513076 418 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 RNU6-352P-201ENST00000516908 107 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXD4P09016 IGKV2D-19-201ENST00000523346 262 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC007834.2-201ENST00000536310 343 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXD4P09016 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC004217.3-201ENST00000551552 878 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 SERPINE4P-201ENST00000554978 281 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD4P09016 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXD4P09016 RNA5SP108-201ENST00000605921 117 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC113194.1-201ENST00000606037 500 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC080013.3-201ENST00000606839 578 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AC097478.2-201ENST00000610572 514 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD4P09016 AL359535.1-201ENST00000612100 1087 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 AL591424.2-201ENST00000617023 128 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD4P09016 AC009039.2-201ENST00000624524 529 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 MIR1322-201ENST00000638013 71 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXD4P09016 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD4P09016 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 AC104454.1-201ENST00000421341 1401 ntBASIC3.44□□□□□ -1.86
HOXD4P09016 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HOXD4P09016 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD4P09016 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 HMGB1P5-201ENST00000255320 642 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HOXD4P09016 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 RNU6-1293P-201ENST00000384077 107 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 MIR491-201ENST00000384877 84 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 SNORD65.1-201ENST00000390889 71 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 PAICSP7-201ENST00000419829 962 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC007435.1-201ENST00000421086 415 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXD4P09016 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 MTND5P25-201ENST00000430499 799 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 AL008629.1-201ENST00000438615 184 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms