Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.35□□□□□ -2.03
HMGB3O15347 RNU1-95P-201ENST00000516357 160 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 RNU1-128P-201ENST00000516704 160 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC087373.1-201ENST00000524920 491 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.35□□□□□ -2.03
HMGB3O15347 SERPINE4P-201ENST00000554978 281 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC007224.1-201ENST00000564410 144 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC087481.2-201ENST00000565492 330 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 MIR5186-201ENST00000577504 120 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC138761.3-201ENST00000579993 334 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
HMGB3O15347 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HMGB3O15347 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC2.35□□□□□ -2.03
HMGB3O15347 CCDC58P3-201ENST00000590792 430 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC009464.1-201ENST00000615731 469 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC092650.2-201ENST00000619984 902 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 AC002064.3-201ENST00000623448 346 ntBASIC2.35□□□□□ -2.03
HMGB3O15347 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.35□□□□□ -2.03
HMGB3O15347 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HMGB3O15347 RNU6-263P-201ENST00000363811 107 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 MIR218-2-201ENST00000385006 110 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AL590004.2-201ENST00000404787 371 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 Z85994.2-201ENST00000434327 452 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 HSPD1P21-201ENST00000436541 245 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 RPS29P6-201ENST00000438196 145 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 RPS29P2-201ENST00000479278 136 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AC106707.2-201ENST00000484182 374 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
HMGB3O15347 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 CDH12P4-201ENST00000517835 295 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 CDH12P3-201ENST00000517935 295 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 CDH12P1-201ENST00000518435 295 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC004486.1-201ENST00000546846 233 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC2.34□□□□□ -2.03
HMGB3O15347 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
HMGB3O15347 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 AL669831.4-202ENST00000590817 238 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 AC008277.2-201ENST00000605196 797 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AL121917.1-203ENST00000605534 577 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 AC073111.2-201ENST00000605657 1075 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 HSPE1P14-201ENST00000605812 302 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 AL161637.1-201ENST00000622380 412 ntBASIC2.34□□□□□ -2.03
HMGB3O15347 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.34□□□□□ -2.03
HMGB3O15347 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.34□□□□□ -2.03
HMGB3O15347 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.34□□□□□ -2.04
HMGB3O15347 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
HMGB3O15347 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.33□□□□□ -2.04
HMGB3O15347 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.33□□□□□ -2.04
HMGB3O15347 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HMGB3O15347 RNU1-64P-201ENST00000365443 163 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 RNU6-891P-201ENST00000384280 111 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 U3.19-201ENST00000390893 196 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 AL512633.1-201ENST00000399931 655 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 CASKP1-201ENST00000412870 582 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 AL645937.1-202ENST00000421799 937 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 HSFY1P1-201ENST00000423928 1178 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 YWHAZP8-201ENST00000436935 731 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 AC092641.1-201ENST00000440229 772 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HMGB3O15347 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.33□□□□□ -2.04
HMGB3O15347 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 AC126182.1-201ENST00000478134 357 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 RPL9P33-201ENST00000484311 566 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.33□□□□□ -2.04
HMGB3O15347 DYNLL1P6-201ENST00000503440 264 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HMGB3O15347 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.33□□□□□ -2.04
HMGB3O15347 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
HMGB3O15347 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.33□□□□□ -2.04
HMGB3O15347 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 OR5B10P-201ENST00000532869 642 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 AC139103.1-201ENST00000534696 1030 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
HMGB3O15347 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.33□□□□□ -2.04
HMGB3O15347 MIR4504-201ENST00000577413 92 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 MIR3922-201ENST00000585192 84 ntBASIC2.33□□□□□ -2.04
HMGB3O15347 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.33□□□□□ -2.04
HMGB3O15347 AC009303.3-201ENST00000591103 736 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms