Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 SNORD21-201ENST00000383953 95 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 FAT1P1-201ENST00000406588 507 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 RNU2-6P-201ENST00000411404 190 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 AC107081.1-201ENST00000414975 361 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 AL845331.3-202ENST00000562856 261 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 AC004825.2-201ENST00000616634 455 ntBASIC4.04□□□□□ -1.76
CCDC88BA6NC98 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CCDC88BA6NC98 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC88BA6NC98 RNU6-253P-201ENST00000384730 105 ntBASIC4.03□□□□□ -1.76
CCDC88BA6NC98 AL023284.1-201ENST00000403956 276 ntBASIC4.03□□□□□ -1.76
CCDC88BA6NC98 BTG3P1-201ENST00000435859 716 ntBASIC4.03□□□□□ -1.76
CCDC88BA6NC98 POU5F1P7-201ENST00000508759 541 ntBASIC4.03□□□□□ -1.76
CCDC88BA6NC98 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC88BA6NC98 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
CCDC88BA6NC98 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC88BA6NC98 AC087468.1-201ENST00000604365 630 ntBASIC4.03□□□□□ -1.76
CCDC88BA6NC98 AC123768.4-201ENST00000616244 701 ntBASIC4.03□□□□□ -1.76
CCDC88BA6NC98 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 Z99496.1-201ENST00000469424 1477 ntBASIC4.02□□□□□ -1.77
CCDC88BA6NC98 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 GSTA12P-201ENST00000402398 508 ntBASIC4.02□□□□□ -1.77
CCDC88BA6NC98 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 HMGN2P23-201ENST00000456759 269 ntBASIC4.02□□□□□ -1.77
CCDC88BA6NC98 RPL23AP11-201ENST00000475260 469 ntBASIC4.02□□□□□ -1.77
CCDC88BA6NC98 AC108860.1-201ENST00000484521 383 ntBASIC4.02□□□□□ -1.77
CCDC88BA6NC98 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88BA6NC98 AC009501.3-201ENST00000605001 1352 ntBASIC4.02□□□□□ -1.77
CCDC88BA6NC98 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 MTND5P27-201ENST00000428871 1720 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 RNU6-482P-201ENST00000391068 107 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 HSPD1P16-201ENST00000402302 394 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 AC010881.1-201ENST00000433830 235 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 MTCO3P11-201ENST00000455103 774 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 RPS4XP6-201ENST00000477670 797 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 RPL23AP44-201ENST00000482216 473 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 AC106872.3-201ENST00000495104 446 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 ATP5F1P5-201ENST00000526403 760 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 AC074029.1-201ENST00000552531 1044 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 TRAV37-201ENST00000553906 342 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 AC025281.1-201ENST00000567026 265 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 BX664608.1-201ENST00000610519 487 ntBASIC4.01□□□□□ -1.77
CCDC88BA6NC98 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88BA6NC98 CUL1P1-201ENST00000509510 2425 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC88BA6NC98 AL512430.2-201ENST00000406786 339 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 AC073136.2-201ENST00000417282 849 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4□□□□□ -1.77
CCDC88BA6NC98 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4□□□□□ -1.77
CCDC88BA6NC98 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4□□□□□ -1.77
CCDC88BA6NC98 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4□□□□□ -1.77
CCDC88BA6NC98 AC068587.2-201ENST00000478386 781 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 AC092185.1-201ENST00000491371 97 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4□□□□□ -1.77
CCDC88BA6NC98 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC4□□□□□ -1.77
CCDC88BA6NC98 AC022884.3-201ENST00000579571 248 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4□□□□□ -1.77
CCDC88BA6NC98 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC88BA6NC98 AC095050.2-201ENST00000510748 1458 ntBASIC4□□□□□ -1.77
CCDC88BA6NC98 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88BA6NC98 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 SNORA51.4-201ENST00000364993 124 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 PTP4A1P7-201ENST00000423476 514 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC092427.1-202ENST00000430569 476 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC009969.1-201ENST00000438726 172 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 TRBV1-201ENST00000476502 284 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC068305.1-201ENST00000497406 726 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC104090.1-201ENST00000506341 1171 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AC103710.3-201ENST00000608157 948 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 AL445437.1-201ENST00000623157 3087 ntBASIC3.99□□□□□ -1.77
CCDC88BA6NC98 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88BA6NC98 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 RNA5SP99-201ENST00000364020 114 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 GSTA9P-201ENST00000406231 611 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 RPS15AP28-201ENST00000435088 386 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MTCYBP20-201ENST00000524239 1129 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms