Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.552-201ENST00000384665 112 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 NDUFS5P1-201ENST00000405668 289 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 OR6E1P-201ENST00000414424 923 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 GJA6P-201ENST00000415117 1042 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 RNF10P1-201ENST00000418589 369 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AL139095.3-201ENST00000419672 1203 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 RPL12P17-201ENST00000432393 498 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 RPL21P112-201ENST00000434403 463 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 RPS15AP27-201ENST00000449183 343 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 PPIAP3-201ENST00000450588 505 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AL353691.1-201ENST00000451332 387 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC116533.1-201ENST00000459748 321 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 RN7SL802P-201ENST00000577858 299 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 MIR4311-201ENST00000580794 100 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC009229.3-201ENST00000608056 282 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC020634.1-201ENST00000608701 549 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 MIR6128-201ENST00000615528 109 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AL118522.2-201ENST00000616045 615 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AC138907.8-201ENST00000623981 2256 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 AL022323.4-201ENST00000623980 13120 ntBASIC5.93□□□□□ -1.46
USP3Q9Y6I4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP3Q9Y6I4 ZNF33CP-201ENST00000432492 2030 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC097461.1-201ENST00000568928 2821 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 MIR323A-201ENST00000362199 86 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-1078P-201ENST00000364522 103 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.399-201ENST00000383955 105 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.493-201ENST00000384422 102 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-1127P-201ENST00000384580 107 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 MIR143-201ENST00000385300 106 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL583834.1-201ENST00000406943 343 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-101P-201ENST00000410323 104 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-1050P-201ENST00000410388 107 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RPL6P29-201ENST00000414863 865 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL133173.1-201ENST00000423458 397 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RSL24D1P6-201ENST00000426934 401 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 SUMO1P3-201ENST00000439961 304 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC005094.1-201ENST00000440420 368 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 CYCSP24-201ENST00000445119 316 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 PPIAP20-201ENST00000449839 135 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 DEFB109F-201ENST00000491870 277 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RN7SL466P-201ENST00000497546 295 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RPL23AP55-201ENST00000498163 452 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC107222.1-201ENST00000510899 637 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-470P-201ENST00000515954 104 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNY3P15-201ENST00000516297 97 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-388P-201ENST00000517012 105 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-389P-201ENST00000517048 105 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 RNU6-64P-201ENST00000517119 105 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC087854.1-201ENST00000519706 414 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 HMGN1P28-201ENST00000521340 364 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC090115.3-201ENST00000553218 849 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL589674.2-201ENST00000604304 337 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms