Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 MIR7975-201ENST00000619350 68 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC022306.3-201ENST00000619930 550 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC084824.4-201ENST00000620106 731 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC244100.1-202ENST00000621554 382 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC127502.3-201ENST00000636170 1206 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RNU5E-10P-201ENST00000363506 118 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RNU6-263P-201ENST00000363811 107 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 MIR7-3-201ENST00000384898 110 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RNU6-837P-201ENST00000391056 108 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RPS7P15-201ENST00000415804 584 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL513174.1-201ENST00000423182 629 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RPF2P1-201ENST00000424137 906 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RAC1P8-201ENST00000427086 527 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL138799.3-201ENST00000438968 350 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 MTCO1P48-201ENST00000448024 1096 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC079776.3-201ENST00000450665 370 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 CYCSP35-201ENST00000451978 304 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 snoU13.3-201ENST00000459441 104 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 RPS4XP10-201ENST00000465034 731 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC034236.1-201ENST00000469891 373 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC013828.1-201ENST00000481845 158 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 KLRA1P-201ENST00000503499 986 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC096571.1-202ENST00000506634 735 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC091163.3-201ENST00000518269 1144 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AP001189.2-201ENST00000527320 189 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 CBX3P5-201ENST00000552017 521 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL669831.4-202ENST00000590817 238 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 DPRXP5-201ENST00000604662 539 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 uc_338.32-201ENST00000615087 172 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC123767.1-202ENST00000620407 817 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AC008725.1-201ENST00000605123 2263 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LHX3Q9UBR4 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.47□□□□□ -1.85
LHX3Q9UBR4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 SNORA63.1-201ENST00000362493 131 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 RNA5SP189-201ENST00000364920 115 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 RNU6-730P-201ENST00000383954 104 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 SNORD65.1-201ENST00000390889 71 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 MTND4LP20-201ENST00000402379 270 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 RNU4-78P-201ENST00000410940 126 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 VN1R51P-201ENST00000411675 945 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 Z99755.1-201ENST00000414048 380 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 RPL7P53-201ENST00000421245 739 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC097713.2-201ENST00000430199 356 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 HSFY7P-201ENST00000432672 318 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 HSFY8P-201ENST00000437934 318 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 HMGB3P6-201ENST00000444896 598 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AL034418.1-201ENST00000448675 860 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 HSFY5P-201ENST00000453726 309 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 PNPLA4P1-201ENST00000458328 305 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 RPS4XP2-201ENST00000458402 793 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC092045.1-201ENST00000495716 1231 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 MTATP6P9-201ENST00000515039 680 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 RNU2-58P-201ENST00000516403 183 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms