Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL353746.1-201ENST00000566293 6881 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 SRP72P2-201ENST00000344851 1979 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 RNA5SP235-201ENST00000365411 114 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 RNU6-629P-201ENST00000384061 103 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 RNU6-761P-201ENST00000384148 107 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 RPL7P27-201ENST00000403775 720 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL583834.1-201ENST00000406943 343 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC069282.1-201ENST00000411911 526 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC069157.1-201ENST00000421749 137 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 RPS6P14-201ENST00000425165 719 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC005345.1-201ENST00000431868 217 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC244505.3-201ENST00000454598 187 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 TRBV26-201ENST00000456572 344 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 OR8I1P-201ENST00000529291 931 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 ZNF705CP-201ENST00000530515 889 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC093519.1-201ENST00000566109 298 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC126365.2-201ENST00000580630 379 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 MIR3922-201ENST00000585192 84 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC008507.2-201ENST00000588402 1176 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC092574.1-201ENST00000609771 420 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 MIR6075-201ENST00000620782 95 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 PWAR6-201ENST00000552334 4618 ntBASIC3.46□□□□□ -1.86
VPS35Q96QK1 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
VPS35Q96QK1 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AL136520.1-201ENST00000600311 1322 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 DBF4P1-201ENST00000412976 1892 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL079305.1-201ENST00000623159 3008 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC073073.2-201ENST00000609827 2578 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS35Q96QK1 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS35Q96QK1 RNU6-989P-201ENST00000362756 107 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 SNORA51.2-201ENST00000364595 132 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL035405.1-201ENST00000400795 710 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC068533.1-201ENST00000418542 415 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 FNDC3CP-201ENST00000420795 1155 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS35Q96QK1 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 RPL23AP16-201ENST00000441715 421 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 ELOCP13-201ENST00000443934 329 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 MTCO3P2-201ENST00000457365 171 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 RPL5P24-201ENST00000463742 885 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC104629.1-201ENST00000494226 508 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS35Q96QK1 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC019227.1-201ENST00000526902 510 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 CCNG2P1-201ENST00000549521 1000 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC044913.1-201ENST00000557200 430 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC104072.1-201ENST00000568817 668 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC090666.1-201ENST00000578241 445 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 MIR4738-201ENST00000579134 87 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 BNIP3P38-201ENST00000601117 544 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC022149.2-201ENST00000621061 203 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL512506.2-201ENST00000624472 458 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 AC048347.1-201ENST00000624621 427 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.45□□□□□ -1.86
VPS35Q96QK1 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS35Q96QK1 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VPS35Q96QK1 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms