Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 HSPE1P5-201ENST00000561489 272 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC025627.2-201ENST00000576220 160 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.8□□□□□ -1.8
VMP1Q96GC9 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC067959.1-201ENST00000604334 379 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AL022099.1-201ENST00000604551 712 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC106900.2-201ENST00000604994 317 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AL451074.6-201ENST00000608512 729 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC009237.15-201ENST00000610252 501 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 AC090246.1-201ENST00000616499 426 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 RNA5SP196-201ENST00000625967 102 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 OR5BE1P-202ENST00000641168 1176 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.8□□□□□ -1.8
VMP1Q96GC9 RLIMP1-201ENST00000339626 1680 ntBASIC3.8□□□□□ -1.8
VMP1Q96GC9 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.8□□□□□ -1.8
VMP1Q96GC9 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 SNRPEP3-201ENST00000338402 276 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 RNU6-1155P-201ENST00000363554 107 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 SNORD35B-201ENST00000363660 87 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 RNU6-1000P-201ENST00000391066 106 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AL136372.1-201ENST00000403060 228 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 PPIAP31-201ENST00000405422 495 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 MIR1193-201ENST00000408109 78 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 PGBD4P8-201ENST00000412993 562 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC127526.1-201ENST00000417526 366 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 AL117339.2-201ENST00000430475 180 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 MTCO3P20-201ENST00000454926 688 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 CBX3P3-201ENST00000508108 532 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 MTCYBP16-201ENST00000509187 1129 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 RNU7-143P-201ENST00000516781 65 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC104986.1-201ENST00000517978 436 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC024224.1-201ENST00000538284 609 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 OR8R1P-201ENST00000543943 764 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC053481.3-201ENST00000577881 843 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC012417.1-201ENST00000582307 1039 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 BNIP3P31-201ENST00000604515 566 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AL031176.1-201ENST00000604554 466 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC002076.2-201ENST00000617362 122 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC073348.1-201ENST00000623002 331 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AC004009.2-201ENST00000623016 728 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 AP002371.2-201ENST00000624450 503 ntBASIC3.79□□□□□ -1.8
VMP1Q96GC9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VMP1Q96GC9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VMP1Q96GC9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VMP1Q96GC9 OR4G11P-202ENST00000642116 1414 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VMP1Q96GC9 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VMP1Q96GC9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VMP1Q96GC9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 RNA5SP479-201ENST00000364858 117 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 SNORA57.1-201ENST00000391227 145 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 RNU2-47P-201ENST00000410649 186 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 RPL17P36-201ENST00000420302 549 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC019178.2-201ENST00000423595 505 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC233728.2-201ENST00000425348 757 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AL691449.1-201ENST00000426570 421 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AL358472.1-201ENST00000431295 329 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC096638.2-201ENST00000434965 711 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC026410.2-201ENST00000460281 156 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 RPS4XP10-201ENST00000465034 731 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 RPS15AP17-201ENST00000470598 390 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC006483.1-201ENST00000487308 313 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 MTND4LP22-201ENST00000508209 276 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 AC093752.1-206ENST00000511823 336 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 SNORD59.2-201ENST00000516873 68 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.78□□□□□ -1.8
VMP1Q96GC9 CR383656.7-201ENST00000548164 174 ntBASIC3.78□□□□□ -1.8
VMP1Q96GC9 HSPE1P3-201ENST00000559254 309 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms