Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL513174.1-201ENST00000423182 629 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC104837.2-201ENST00000427236 424 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 RPL7AP49-201ENST00000429522 581 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL591438.1-201ENST00000433508 581 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 KNOP1P3-201ENST00000446933 426 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 H2AFZP5-201ENST00000446960 382 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 RPS3AP41-201ENST00000462701 778 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 RPS29P25-201ENST00000481709 171 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC140172.1-201ENST00000502928 141 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 COX6B1P5-201ENST00000509843 249 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 TXNP6-201ENST00000510190 310 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC034159.1-201ENST00000513885 583 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 Y_RNA.701-201ENST00000516812 110 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC107954.1-201ENST00000565906 727 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC091489.2-201ENST00000566263 604 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 RN7SL290P-201ENST00000578661 300 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 MIR544B-201ENST00000582372 78 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 MIR4480-201ENST00000582492 71 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 MIR4691-201ENST00000583764 85 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC008752.3-201ENST00000588113 712 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC060780.3-201ENST00000589464 80 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC131902.3-201ENST00000611767 581 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC135507.2-201ENST00000612443 309 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL592295.2-201ENST00000612578 206 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC136475.10-201ENST00000620253 385 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 FRG1KP-201ENST00000623592 341 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC067931.1-201ENST00000624190 671 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC009033.1-201ENST00000624279 431 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 MIR6863-201ENST00000636112 90 ntBASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CLIP3Q96DZ5 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RN7SKP104-201ENST00000362605 328 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RNU1-94P-201ENST00000362627 173 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RNU6-821P-201ENST00000390995 107 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RNA5SP241-201ENST00000391326 114 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 MTCO3P40-201ENST00000392516 676 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RPS20P15-201ENST00000412792 311 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RAD23BP1-201ENST00000421404 1227 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC069157.1-201ENST00000421749 137 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 KCTD9P3-201ENST00000434597 1169 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 MTND1P18-201ENST00000448191 573 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 PDSS1P2-201ENST00000449397 678 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC093267.1-201ENST00000489176 961 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RNU6-27P-201ENST00000516146 107 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 RNU6-430P-201ENST00000517078 107 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC090615.1-201ENST00000577519 154 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC022432.1-201ENST00000595739 310 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 PRELID3BP8-201ENST00000604148 295 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC010680.3-201ENST00000604215 520 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL139286.1-201ENST00000604465 483 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL020991.1-201ENST00000612314 373 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms