Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 Y_RNA.72-201ENST00000362894 103 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 SNORA7.2-201ENST00000364446 145 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RNU6-1029P-201ENST00000384109 107 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 LAP3P1-201ENST00000403648 294 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL133388.1-201ENST00000404509 287 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 NDUFS5P1-201ENST00000405668 289 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RPS23P10-201ENST00000416185 486 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 MTCYBP8-201ENST00000422855 651 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 DUTP6-201ENST00000425573 462 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL360081.1-201ENST00000428299 555 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RPS12P17-201ENST00000438591 377 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RPL23AP43-201ENST00000446445 471 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC097359.1-201ENST00000447946 463 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 BX842559.2-201ENST00000451418 605 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 TFP1-201ENST00000460564 572 ntTSL 4 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RPL7L1P8-201ENST00000469911 741 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RN7SL350P-201ENST00000492591 299 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC046134.1-201ENST00000514454 666 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RN7SKP196-201ENST00000516267 345 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC008489.1-201ENST00000524271 483 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL133399.1-201ENST00000527476 298 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC109635.4-202ENST00000531666 412 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 MIR4703-201ENST00000577728 79 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AP001029.3-201ENST00000588063 596 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 BDH2P1-201ENST00000602288 736 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC105254.2-201ENST00000603636 436 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 RPS4XP21-201ENST00000603814 750 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC233309.1-201ENST00000619522 751 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 uc_338.7-201ENST00000621834 124 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 AC007998.5-201ENST00000622938 237 ntBASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.39□□□□□ -1.71
CLRN3Q8NCR9 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AL139276.1-201ENST00000311910 1001 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 RNU6-61P-201ENST00000365528 109 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 SNORA24.1-201ENST00000384401 135 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 RNU6-193P-201ENST00000410977 107 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 OR6C66P-201ENST00000414917 930 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 GJA6P-201ENST00000415117 1042 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC008850.1-201ENST00000427546 362 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 CALM2P2-201ENST00000428512 440 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 ATP6V1G1P4-201ENST00000438388 335 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 RPL26P6-201ENST00000440913 438 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 PCNPP2-201ENST00000441651 455 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 FTLP8-201ENST00000446770 267 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AL445991.1-201ENST00000450381 475 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 snoU13.24-201ENST00000458998 104 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 RPL5P30-201ENST00000465511 891 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 EIF4EP3-201ENST00000498782 656 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 IGBP1P4-201ENST00000503202 879 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 HMGB1P22-201ENST00000505315 124 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 LRRC34P2-201ENST00000514850 553 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 RNU4-29P-201ENST00000515943 174 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 RN7SKP219-201ENST00000516825 296 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC022832.1-201ENST00000530718 645 ntBASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.38□□□□□ -1.71
CLRN3Q8NCR9 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 143.5 ms