Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL157831.1-201ENST00000426134 473 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 COX6B1P7-201ENST00000430845 235 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC093019.1-201ENST00000443135 252 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AL590365.1-201ENST00000450788 243 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC020890.1-201ENST00000491837 504 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AL132838.2-201ENST00000492041 314 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC114786.4-201ENST00000508771 728 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC010493.1-201ENST00000513479 292 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC023632.4-201ENST00000517783 191 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 MTND1P35-201ENST00000526739 508 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 FAM92A1P1-201ENST00000528023 890 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC068587.4-201ENST00000533893 186 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AL390334.1-201ENST00000556395 450 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 MIR4660-201ENST00000583549 74 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC116563.2-201ENST00000624751 535 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 RNU1-14P-201ENST00000362759 152 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 RNU6-877P-201ENST00000383868 107 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 Y_RNA.509-201ENST00000384506 99 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 MIR506-201ENST00000384998 124 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 RPS3AP36-201ENST00000398190 775 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 BX295541.1-201ENST00000417774 250 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 SKP1P1-201ENST00000438081 489 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC092757.1-201ENST00000467293 467 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 RBM43P1-201ENST00000476891 1081 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC105914.1-201ENST00000511798 226 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 HIGD1AP6-201ENST00000521833 279 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AF235103.2-201ENST00000525753 346 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC090751.1-201ENST00000566966 267 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC091178.1-203ENST00000584586 279 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC005261.5-201ENST00000596280 355 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 BNIP3P23-201ENST00000599655 511 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC007363.1-201ENST00000604736 620 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 MIR7973-1-201ENST00000614683 76 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AL445264.1-201ENST00000621719 171 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC112484.5-201ENST00000624189 228 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 ATE1-AS1-202ENST00000636460 506 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC024614.3-201ENST00000637860 256 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 DDX18P4-201ENST00000511690 1966 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 AC125336.1-201ENST00000508893 2827 ntBASIC5.75□□□□□ -1.49
USHBP1Q8N6Y0 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 OR4A15-201ENST00000314706 1035 ntBASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 AL356057.2-201ENST00000403318 432 ntBASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 RPS20P15-201ENST00000412792 311 ntBASIC5.74□□□□□ -1.49
USHBP1Q8N6Y0 AC092634.6-201ENST00000418558 192 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms