Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RN7SKP244-201ENST00000516513 307 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AP000867.2-201ENST00000532468 320 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.3□□□□□ -1.88
USP54Q70EL1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.3□□□□□ -1.88
USP54Q70EL1 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.3□□□□□ -1.88
USP54Q70EL1 MIR1273D-201ENST00000577266 86 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AC069234.5-201ENST00000611056 416 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AP002967.1-201ENST00000624203 539 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP54Q70EL1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP54Q70EL1 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
USP54Q70EL1 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
USP54Q70EL1 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
USP54Q70EL1 GAPDHP39-201ENST00000481866 979 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP54Q70EL1 SEC11B-201ENST00000518383 499 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AP001207.1-201ENST00000524051 481 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.3□□□□□ -1.88
USP54Q70EL1 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3.3□□□□□ -1.88
USP54Q70EL1 AL450489.1-201ENST00000612071 468 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 AP006248.2-201ENST00000623309 592 ntBASIC3.3□□□□□ -1.88
USP54Q70EL1 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.29□□□□□ -1.88
USP54Q70EL1 RN7SKP44-201ENST00000363602 316 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
USP54Q70EL1 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
USP54Q70EL1 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
USP54Q70EL1 AL162578.1-201ENST00000406202 378 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 RNA5SP129-201ENST00000410276 118 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 RNU4-53P-201ENST00000410828 140 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.29□□□□□ -1.88
USP54Q70EL1 SNRPFP2-201ENST00000440710 251 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 AL162388.1-201ENST00000450912 352 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 RPS4XP6-201ENST00000477670 797 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 AC034244.2-201ENST00000514668 858 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.29□□□□□ -1.88
USP54Q70EL1 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.29□□□□□ -1.88
USP54Q70EL1 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.29□□□□□ -1.88
USP54Q70EL1 AC068313.1-201ENST00000604028 1008 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 AC007938.3-201ENST00000604965 623 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 AC107871.2-201ENST00000612894 502 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
USP54Q70EL1 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.29□□□□□ -1.88
USP54Q70EL1 AC069528.2-201ENST00000624849 1991 ntBASIC3.29□□□□□ -1.88
USP54Q70EL1 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.29□□□□□ -1.88
USP54Q70EL1 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.29□□□□□ -1.88
USP54Q70EL1 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.29□□□□□ -1.88
USP54Q70EL1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
USP54Q70EL1 AC066616.2-201ENST00000559334 1481 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP54Q70EL1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP54Q70EL1 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
USP54Q70EL1 RPL9P7-201ENST00000330965 580 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 RNA5SP456-201ENST00000364002 114 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP54Q70EL1 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.28□□□□□ -1.88
USP54Q70EL1 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC3.28□□□□□ -1.88
USP54Q70EL1 BTG3P1-201ENST00000435859 716 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 AL357520.1-201ENST00000441557 453 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 FAM103A2P-201ENST00000444122 354 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.28□□□□□ -1.88
USP54Q70EL1 OR7K1P-201ENST00000546439 926 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 HMGB3P26-201ENST00000560051 582 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 VN1R79P-201ENST00000593540 513 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 AP003499.2-201ENST00000624100 483 ntBASIC3.28□□□□□ -1.88
USP54Q70EL1 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
USP54Q70EL1 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
USP54Q70EL1 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.28□□□□□ -1.89
USP54Q70EL1 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.28□□□□□ -1.89
USP54Q70EL1 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.27□□□□□ -1.89
USP54Q70EL1 RN7SKP140-201ENST00000411196 284 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 RPL23AP45-201ENST00000476406 468 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 AC093331.1-201ENST00000521474 169 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
USP54Q70EL1 YWHAZP1-201ENST00000556286 722 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 RPL23AP84-201ENST00000571193 464 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
USP54Q70EL1 AC090229.1-201ENST00000590983 1609 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 HSPA8P4-201ENST00000511877 1920 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.27□□□□□ -1.89
USP54Q70EL1 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
USP54Q70EL1 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP54Q70EL1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP54Q70EL1 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.27□□□□□ -1.89
USP54Q70EL1 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP54Q70EL1 AL079342.1-201ENST00000401460 267 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 AC011816.1-201ENST00000441346 546 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.27□□□□□ -1.89
USP54Q70EL1 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.27□□□□□ -1.89
USP54Q70EL1 RPL21P18-201ENST00000469899 480 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.27□□□□□ -1.89
USP54Q70EL1 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.27□□□□□ -1.89
USP54Q70EL1 AC019227.1-201ENST00000526902 510 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.27□□□□□ -1.89
USP54Q70EL1 AC123904.3-201ENST00000547218 814 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 CBX3P5-201ENST00000552017 521 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 TRAV37-201ENST00000553906 342 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 CKS1BP1-201ENST00000555221 240 ntBASIC3.27□□□□□ -1.89
USP54Q70EL1 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms