Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC104389.3-201ENST00000445629 235 ntBASIC2.46□□□□□ -2.02
CHD9Q3L8U1 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.46□□□□□ -2.02
CHD9Q3L8U1 AC078814.3-201ENST00000553036 491 ntBASIC2.46□□□□□ -2.02
CHD9Q3L8U1 MTCYBP28-201ENST00000566728 1132 ntBASIC2.46□□□□□ -2.02
CHD9Q3L8U1 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.46□□□□□ -2.02
CHD9Q3L8U1 AC090897.3-201ENST00000636973 1157 ntBASIC2.46□□□□□ -2.02
CHD9Q3L8U1 Z82209.1-201ENST00000422141 2135 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CHD9Q3L8U1 AL590004.2-201ENST00000404787 371 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC2.45□□□□□ -2.02
CHD9Q3L8U1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.45□□□□□ -2.02
CHD9Q3L8U1 RPL23AP42-201ENST00000471152 471 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 AC021733.2-201ENST00000518830 497 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 AL049840.6-202ENST00000603373 279 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CHD9Q3L8U1 Z82205.1-201ENST00000428456 297 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 RN7SKP82-201ENST00000516786 223 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 AC090695.1-201ENST00000561269 1222 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.45□□□□□ -2.02
CHD9Q3L8U1 AP004247.3-201ENST00000608682 624 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.45□□□□□ -2.02
CHD9Q3L8U1 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CHD9Q3L8U1 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 OR10AB1P-202ENST00000641219 1686 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 RNU1-100P-201ENST00000365255 165 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 SNORA67.3-201ENST00000384366 140 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 AL034379.1-201ENST00000423216 253 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 RPS15AP28-201ENST00000435088 386 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 AP000893.1-201ENST00000474462 794 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 KCTD9P5-201ENST00000504141 1170 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 AL022099.1-201ENST00000604551 712 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 CR589904.2-201ENST00000612533 440 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 YWHAEP7-203ENST00000622054 312 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 AC122134.1-201ENST00000565664 1104 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 RMST_9.1-201ENST00000619945 193 ntBASIC2.44□□□□□ -2.02
CHD9Q3L8U1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHD9Q3L8U1 RNU6-1140P-201ENST00000410517 106 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AC108667.1-201ENST00000428618 249 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AC013410.1-201ENST00000436223 1232 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 PHKBP1-201ENST00000450951 1951 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 FAT1P1-201ENST00000406588 507 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 RHEBP3-201ENST00000411920 351 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 RPS6P4-201ENST00000494693 758 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 RNU6-1053P-201ENST00000515930 101 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AC021269.2-201ENST00000532318 330 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AL133271.1-201ENST00000538229 291 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AL359821.1-201ENST00000605519 182 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AL161431.1-201ENST00000618966 4205 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 MTND5P29-201ENST00000458676 1807 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 RNA5SP210-201ENST00000391034 120 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 RPL23AP74-201ENST00000437246 471 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AC124916.1-201ENST00000444020 547 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 snoU13.31-201ENST00000607291 104 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
CHD9Q3L8U1 AL356489.2-201ENST00000566968 3528 ntBASIC2.43□□□□□ -2.02
CHD9Q3L8U1 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 SNORA41-201ENST00000384675 132 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 AL606490.7-201ENST00000433136 191 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 AC004866.2-201ENST00000438285 481 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 RPS26P30-201ENST00000443431 335 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 AC004825.2-201ENST00000616634 455 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CHD9Q3L8U1 RPS6P2-201ENST00000454208 705 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 Z99129.2-201ENST00000619967 314 ntBASIC2.42□□□□□ -2.02
CHD9Q3L8U1 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CHD9Q3L8U1 RNU6-14P-201ENST00000384630 106 ntBASIC2.41□□□□□ -2.02
CHD9Q3L8U1 SPA17P1-201ENST00000416656 452 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms