Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.02□□□□□ -1.77
CUX1P39880 AC061975.8-201ENST00000587058 721 ntBASIC4.02□□□□□ -1.77
CUX1P39880 AC123768.4-201ENST00000616244 701 ntBASIC4.02□□□□□ -1.77
CUX1P39880 AC007342.7-201ENST00000624610 2337 ntBASIC4.02□□□□□ -1.77
CUX1P39880 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CUX1P39880 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CUX1P39880 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.01□□□□□ -1.77
CUX1P39880 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CUX1P39880 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.01□□□□□ -1.77
CUX1P39880 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.01□□□□□ -1.77
CUX1P39880 MIR1183-201ENST00000408856 89 ntBASIC4.01□□□□□ -1.77
CUX1P39880 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
CUX1P39880 AC011037.1-201ENST00000483964 558 ntBASIC4.01□□□□□ -1.77
CUX1P39880 MIR5092-201ENST00000583139 88 ntBASIC4.01□□□□□ -1.77
CUX1P39880 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC4.01□□□□□ -1.77
CUX1P39880 AC104454.1-201ENST00000421341 1401 ntBASIC4.01□□□□□ -1.77
CUX1P39880 SYT14P1-202ENST00000600441 1448 ntBASIC4.01□□□□□ -1.77
CUX1P39880 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4□□□□□ -1.77
CUX1P39880 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4□□□□□ -1.77
CUX1P39880 AC002553.2-201ENST00000453217 340 ntBASIC4□□□□□ -1.77
CUX1P39880 AL354710.1-201ENST00000453641 246 ntBASIC4□□□□□ -1.77
CUX1P39880 HMGN2P23-201ENST00000456759 269 ntBASIC4□□□□□ -1.77
CUX1P39880 RPL21P99-201ENST00000480369 423 ntBASIC4□□□□□ -1.77
CUX1P39880 NIPA2P2-201ENST00000496376 1083 ntBASIC4□□□□□ -1.77
CUX1P39880 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4□□□□□ -1.77
CUX1P39880 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4□□□□□ -1.77
CUX1P39880 AL136981.2-201ENST00000617319 734 ntBASIC4□□□□□ -1.77
CUX1P39880 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC4□□□□□ -1.77
CUX1P39880 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CUX1P39880 RNA5SP99-201ENST00000364020 114 ntBASIC4□□□□□ -1.77
CUX1P39880 AL162578.1-201ENST00000406202 378 ntBASIC4□□□□□ -1.77
CUX1P39880 ATG3P1-201ENST00000419507 911 ntBASIC4□□□□□ -1.77
CUX1P39880 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4□□□□□ -1.77
CUX1P39880 AC016727.1-205ENST00000605437 569 ntBASIC4□□□□□ -1.77
CUX1P39880 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CUX1P39880 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CUX1P39880 AC091564.4-201ENST00000533934 2194 ntBASIC3.99□□□□□ -1.77
CUX1P39880 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CUX1P39880 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.99□□□□□ -1.77
CUX1P39880 AL158825.1-201ENST00000414735 521 ntBASIC3.99□□□□□ -1.77
CUX1P39880 ST13P20-201ENST00000447996 1065 ntBASIC3.99□□□□□ -1.77
CUX1P39880 AC025181.1-201ENST00000477507 416 ntBASIC3.99□□□□□ -1.77
CUX1P39880 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.99□□□□□ -1.77
CUX1P39880 LINC00888-204ENST00000487386 421 ntBASIC3.99□□□□□ -1.77
CUX1P39880 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.99□□□□□ -1.77
CUX1P39880 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CUX1P39880 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.99□□□□□ -1.77
CUX1P39880 AC022884.3-201ENST00000579571 248 ntBASIC3.99□□□□□ -1.77
CUX1P39880 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.99□□□□□ -1.77
CUX1P39880 AC009318.2-201ENST00000610917 651 ntBASIC3.99□□□□□ -1.77
CUX1P39880 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CUX1P39880 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CUX1P39880 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CUX1P39880 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.98□□□□□ -1.77
CUX1P39880 RPL23AP49-201ENST00000492925 468 ntBASIC3.98□□□□□ -1.77
CUX1P39880 AC147055.1-201ENST00000509261 750 ntBASIC3.98□□□□□ -1.77
CUX1P39880 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.98□□□□□ -1.77
CUX1P39880 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.98□□□□□ -1.77
CUX1P39880 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.98□□□□□ -1.77
CUX1P39880 AC044913.1-201ENST00000557200 430 ntBASIC3.98□□□□□ -1.77
CUX1P39880 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.98□□□□□ -1.77
CUX1P39880 AC107871.2-201ENST00000612894 502 ntBASIC3.98□□□□□ -1.77
CUX1P39880 AC092184.1-201ENST00000625042 715 ntBASIC3.98□□□□□ -1.77
CUX1P39880 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CUX1P39880 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CUX1P39880 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CUX1P39880 AC116158.1-201ENST00000560231 2129 ntBASIC3.97□□□□□ -1.77
CUX1P39880 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.97□□□□□ -1.77
CUX1P39880 RANP3-201ENST00000530970 276 ntBASIC3.97□□□□□ -1.77
CUX1P39880 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.97□□□□□ -1.77
CUX1P39880 AC026464.5-201ENST00000562497 722 ntBASIC3.97□□□□□ -1.77
CUX1P39880 MIR5007-201ENST00000583098 95 ntBASIC3.97□□□□□ -1.77
CUX1P39880 GMCL1P2-201ENST00000605230 823 ntBASIC3.97□□□□□ -1.77
CUX1P39880 AC067747.1-201ENST00000608026 250 ntBASIC3.97□□□□□ -1.77
CUX1P39880 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CUX1P39880 ADAM3A-203ENST00000461344 2157 ntBASIC3.97□□□□□ -1.77
CUX1P39880 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.97□□□□□ -1.77
CUX1P39880 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
CUX1P39880 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.96□□□□□ -1.78
CUX1P39880 AL591416.1-201ENST00000404015 867 ntBASIC3.96□□□□□ -1.78
CUX1P39880 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
CUX1P39880 AC104389.3-201ENST00000445629 235 ntBASIC3.96□□□□□ -1.78
CUX1P39880 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC3.96□□□□□ -1.78
CUX1P39880 SEPT7P6-201ENST00000469999 1143 ntBASIC3.96□□□□□ -1.78
CUX1P39880 AC068587.2-201ENST00000478386 781 ntBASIC3.96□□□□□ -1.78
CUX1P39880 AL024509.2-201ENST00000493462 493 ntBASIC3.96□□□□□ -1.78
CUX1P39880 AC112673.1-201ENST00000513168 575 ntBASIC3.96□□□□□ -1.78
CUX1P39880 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CUX1P39880 OR7K1P-201ENST00000546439 926 ntBASIC3.96□□□□□ -1.78
CUX1P39880 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.96□□□□□ -1.78
CUX1P39880 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.96□□□□□ -1.78
CUX1P39880 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.96□□□□□ -1.78
CUX1P39880 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CUX1P39880 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CUX1P39880 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CUX1P39880 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
CUX1P39880 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CUX1P39880 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CUX1P39880 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CUX1P39880 SNORA64-201ENST00000384674 134 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms