Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AL133457.1-201ENST00000564251 987 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC007599.1-201ENST00000568688 1174 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC087683.1-201ENST00000591187 441 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.89□□□□□ -1.63
SMARCA1P28370 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 MIR492-201ENST00000638676 116 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.89□□□□□ -1.63
SMARCA1P28370 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SMARCA1P28370 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SMARCA1P28370 GDI2P1-201ENST00000429312 1336 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AL122126.1-201ENST00000546905 1318 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC090229.1-201ENST00000590983 1609 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 ELL2P4-201ENST00000446870 1376 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 AP002907.1-201ENST00000606361 1430 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC067945.1-201ENST00000342609 618 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 SNORA51.6-201ENST00000384151 125 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 Y_RNA.517-201ENST00000384551 106 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AF274854.1-201ENST00000413236 615 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.88□□□□□ -1.63
SMARCA1P28370 RPS7P13-201ENST00000413955 498 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 RSL24D1P6-201ENST00000426934 401 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC096632.1-201ENST00000427395 310 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.88□□□□□ -1.63
SMARCA1P28370 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.88□□□□□ -1.63
SMARCA1P28370 CDC27P1-201ENST00000445384 715 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.88□□□□□ -1.63
SMARCA1P28370 FGF7P3-201ENST00000454645 303 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC133473.1-201ENST00000455173 299 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.88□□□□□ -1.63
SMARCA1P28370 AC079804.1-201ENST00000461922 436 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 AC087385.1-201ENST00000475062 312 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC005726.1-201ENST00000494679 427 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC114981.1-201ENST00000503897 678 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.88□□□□□ -1.63
SMARCA1P28370 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.88□□□□□ -1.63
SMARCA1P28370 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.88□□□□□ -1.63
SMARCA1P28370 AL117351.2-201ENST00000513571 157 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.88□□□□□ -1.63
SMARCA1P28370 RNA5SP216-201ENST00000516111 123 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 RNU6-720P-201ENST00000516363 108 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.88□□□□□ -1.63
SMARCA1P28370 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.88□□□□□ -1.63
SMARCA1P28370 TVP23BP1-201ENST00000557500 617 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AC091489.2-201ENST00000566263 604 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AP000403.1-201ENST00000603349 851 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 AL136363.2-201ENST00000604173 851 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 MIR7154-201ENST00000620673 73 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 U6.101-201ENST00000637707 76 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 OR11H5P-202ENST00000641612 1325 ntBASIC4.88□□□□□ -1.63
SMARCA1P28370 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SMARCA1P28370 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SMARCA1P28370 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.87□□□□□ -1.63
SMARCA1P28370 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMARCA1P28370 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMARCA1P28370 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC016769.3-201ENST00000396562 315 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 EIF5P1-201ENST00000400019 1231 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AL049693.1-201ENST00000402760 611 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AL160275.2-201ENST00000412010 394 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AL133384.1-201ENST00000412744 351 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.87□□□□□ -1.63
SMARCA1P28370 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 COX6B1P7-201ENST00000430845 235 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 PRELID3BP10-201ENST00000431957 584 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC092641.1-201ENST00000440229 772 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 MTCO1P27-201ENST00000448269 226 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.87□□□□□ -1.63
SMARCA1P28370 RNU7-136P-201ENST00000458819 69 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 RPL37P6-202ENST00000464216 403 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 S100A11P1-201ENST00000477525 312 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms