Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
COL5A3P25940 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL5A3P25940 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL5A3P25940 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL5A3P25940 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 RNA5SP210-201ENST00000391034 120 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 EIF5P1-201ENST00000400019 1231 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 CYCSP45-201ENST00000402289 315 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 AL024474.1-201ENST00000404655 591 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.07□□□□□ -1.92
COL5A3P25940 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.07□□□□□ -1.92
COL5A3P25940 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.07□□□□□ -1.92
COL5A3P25940 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.07□□□□□ -1.92
COL5A3P25940 UBE2V2P4-201ENST00000447495 259 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.07□□□□□ -1.92
COL5A3P25940 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.07□□□□□ -1.92
COL5A3P25940 VN1R17P-201ENST00000472048 1090 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 RPL9P6-201ENST00000492764 598 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.07□□□□□ -1.92
COL5A3P25940 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.07□□□□□ -1.92
COL5A3P25940 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.07□□□□□ -1.92
COL5A3P25940 AGGF1P8-201ENST00000562979 1000 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 BMS1P7-201ENST00000602440 1052 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 NTAN1P1-201ENST00000603150 646 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 MTND5P6-201ENST00000422338 1798 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 AC104454.1-201ENST00000421341 1401 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 RPL21P132-201ENST00000331267 462 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 RPS20P25-201ENST00000412447 352 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 PTP4A1P5-201ENST00000420305 455 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.07□□□□□ -1.92
COL5A3P25940 AL591806.2-201ENST00000433122 173 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 EXTL2P1-201ENST00000446218 416 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 NIPA2P2-201ENST00000496376 1083 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.07□□□□□ -1.92
COL5A3P25940 SEC11B-201ENST00000518383 499 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.07□□□□□ -1.92
COL5A3P25940 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC3.07□□□□□ -1.92
COL5A3P25940 OR4A45P-201ENST00000529954 901 ntBASIC3.07□□□□□ -1.92
COL5A3P25940 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.07□□□□□ -1.92
COL5A3P25940 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL5A3P25940 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC3.07□□□□□ -1.92
COL5A3P25940 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.06□□□□□ -1.92
COL5A3P25940 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.06□□□□□ -1.92
COL5A3P25940 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL5A3P25940 RNU1-73P-201ENST00000383971 164 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 RNU6-76P-201ENST00000384060 104 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 AL162578.1-201ENST00000406202 378 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.06□□□□□ -1.92
COL5A3P25940 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.06□□□□□ -1.92
COL5A3P25940 RPL9P32-201ENST00000464118 620 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 AC068587.2-201ENST00000478386 781 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 AC011037.1-201ENST00000483964 558 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 AC021146.5-201ENST00000503544 545 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 RN7SKP31-201ENST00000516354 278 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 RNA5SP380-201ENST00000517190 98 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 CKS1BP7-201ENST00000522230 235 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.06□□□□□ -1.92
COL5A3P25940 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
COL5A3P25940 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.06□□□□□ -1.92
COL5A3P25940 AC017076.1-201ENST00000607613 578 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.06□□□□□ -1.92
COL5A3P25940 NEAT1-202ENST00000501122 22743 ntBASIC3.06□□□□□ -1.92
COL5A3P25940 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
COL5A3P25940 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
COL5A3P25940 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL5A3P25940 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL5A3P25940 RPL9P7-201ENST00000330965 580 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL5A3P25940 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
COL5A3P25940 Z99127.2-201ENST00000441426 334 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 LINC00888-204ENST00000487386 421 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC147055.1-201ENST00000509261 750 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.05□□□□□ -1.92
COL5A3P25940 AC021733.2-201ENST00000518830 497 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AP001317.1-201ENST00000531194 960 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL5A3P25940 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.05□□□□□ -1.92
COL5A3P25940 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
COL5A3P25940 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL5A3P25940 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.05□□□□□ -1.92
COL5A3P25940 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL5A3P25940 ISCA1P6-201ENST00000427740 390 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.05□□□□□ -1.92
COL5A3P25940 AC104389.3-201ENST00000445629 235 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 RPS4XP6-201ENST00000477670 797 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC090819.1-201ENST00000523800 1111 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC019227.1-201ENST00000526902 510 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC021269.2-201ENST00000532318 330 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.05□□□□□ -1.92
COL5A3P25940 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.05□□□□□ -1.92
COL5A3P25940 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 NF1P10-201ENST00000613227 742 ntBASIC3.05□□□□□ -1.92
COL5A3P25940 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms