Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC4P09017 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC4P09017 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC4P09017 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXC4P09017 TGIF1P1-201ENST00000558095 802 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC023825.1-201ENST00000566704 1030 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC006270.2-201ENST00000578523 652 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 MIR3200-201ENST00000580767 85 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 AC012493.2-201ENST00000595083 291 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AP005229.2-201ENST00000609980 697 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AL359535.1-201ENST00000612100 1087 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC4P09017 AL354976.1-201ENST00000613843 387 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC121761.2-201ENST00000617300 689 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC007275.1-201ENST00000621243 671 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 MIR7153-201ENST00000637758 57 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC4P09017 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC4P09017 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 RNU6-1293P-201ENST00000384077 107 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 MTCO2P8-201ENST00000412213 658 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXC4P09017 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 AL513174.1-201ENST00000423182 629 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 HMGN2P21-201ENST00000447764 270 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXC4P09017 RPL23AP23-201ENST00000452590 471 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXC4P09017 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 AC104164.3-201ENST00000467363 1258 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AP002884.2-201ENST00000471647 395 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 OR5H3P-201ENST00000502817 919 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC069306.1-201ENST00000507006 843 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 PCBP2P3-201ENST00000509726 843 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 ARL2BPP6-201ENST00000512757 439 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 RN7SKP277-201ENST00000516895 283 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 RN7SKP96-201ENST00000516948 297 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC4P09017 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 AC069431.2-201ENST00000604149 1099 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 RNU6-156P-201ENST00000621869 107 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AL078595.3-201ENST00000623815 1166 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC4P09017 AC083865.1-201ENST00000636634 831 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 U6.107-201ENST00000637108 79 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 AC118273.1-201ENST00000525324 3006 ntBASIC3.23□□□□□ -1.89
HOXC4P09017 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXC4P09017 PWAR6-201ENST00000552334 4618 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 RNU6-1005P-201ENST00000384519 107 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 RNU6-796P-201ENST00000391086 107 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC4P09017 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 AL445183.3-201ENST00000414168 502 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 LIPT1P1-201ENST00000415870 1186 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 BX664727.1-201ENST00000416024 466 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AL356968.1-201ENST00000416622 474 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AL512649.1-201ENST00000428997 581 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 AL009048.1-201ENST00000450437 298 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 RPL21P18-201ENST00000469899 480 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC087312.1-201ENST00000471411 480 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 CYCSP20-201ENST00000473154 315 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC126121.1-201ENST00000482313 553 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 HMGB1P38-201ENST00000490557 577 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC4P09017 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC4P09017 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXC4P09017 RPL7L1P13-201ENST00000511702 739 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC093755.1-201ENST00000512950 1023 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 MTCO1P30-201ENST00000515244 580 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 MTND2P26-201ENST00000528255 1029 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 OR6C73P-201ENST00000546432 358 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC4P09017 AC037471.2-201ENST00000564941 598 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 MTATP6P24-201ENST00000576835 677 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC4P09017 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms