Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA3O43365 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA3O43365 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA3O43365 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA3O43365 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA3O43365 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA3O43365 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA3O43365 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA3O43365 AC015813.6-201ENST00000624409 5808 ntBASIC4.33□□□□□ -1.72
HOXA3O43365 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA3O43365 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA3O43365 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA3O43365 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 AP001029.2-203ENST00000589795 4910 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA3O43365 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA3O43365 Y_RNA.67-201ENST00000362870 100 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 SNORA63-201ENST00000363450 132 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 U3.10-201ENST00000364459 214 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 Y_RNA.419-201ENST00000384041 102 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 MIR105-1-201ENST00000385222 81 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 U3.36-201ENST00000408418 213 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 Y_RNA.615-201ENST00000410769 117 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 BX276092.4-201ENST00000452056 248 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 MTND1P9-201ENST00000453775 944 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 AC233279.1-201ENST00000455300 423 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 RPL7P19-201ENST00000469948 618 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC092754.1-201ENST00000472975 479 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA3O43365 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 AC068305.1-201ENST00000497406 726 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 NDUFB5P1-201ENST00000508134 564 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 GLUD1P3-202ENST00000508551 200 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC016559.2-201ENST00000510759 359 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 RNU2-10P-201ENST00000516375 211 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 RN7SKP277-201ENST00000516895 283 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 RNU6-1314P-201ENST00000517139 104 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 IGKV2D-36-201ENST00000518643 226 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.32□□□□□ -1.72
HOXA3O43365 AC103843.2-201ENST00000530523 682 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AP000857.1-201ENST00000532151 543 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC087241.2-201ENST00000535801 324 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC122688.1-201ENST00000541494 223 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA3O43365 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 AC128657.1-201ENST00000549459 145 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AL359219.2-201ENST00000555184 348 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 PSMA3P-201ENST00000555485 635 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC127381.1-201ENST00000555979 939 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 MIR4436B2-201ENST00000581415 91 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 MIR4436B1-201ENST00000583272 91 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AL161729.3-201ENST00000603533 673 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC004908.2-201ENST00000609090 574 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA3O43365 MIR1302-1-201ENST00000637932 143 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA3O43365 AC097063.1-201ENST00000426714 1797 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA3O43365 MUC2-202ENST00000613187 4845 ntBASIC4.32□□□□□ -1.72
HOXA3O43365 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXA3O43365 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXA3O43365 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXA3O43365 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.31□□□□□ -1.72
HOXA3O43365 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA3O43365 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA3O43365 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA3O43365 AC006484.1-201ENST00000435086 1884 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 HSPE1P11-201ENST00000339579 310 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 SNORA17.1-201ENST00000362945 126 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RN7SKP103-201ENST00000363848 320 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 SNORD37.1-201ENST00000390968 65 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 TXNP7-201ENST00000406296 293 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RN7SKP279-201ENST00000411383 298 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 AL354751.2-201ENST00000415471 210 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms