Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL591503.2-201ENST00000442314 1005 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RPL7P52-201ENST00000449200 742 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 MTND1P31-201ENST00000449206 961 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 BTF3P5-201ENST00000457252 467 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RPL38P1-201ENST00000460914 211 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC012158.1-204ENST00000483430 465 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC11O43248 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC005921.1-201ENST00000510589 286 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 PHBP17-201ENST00000528576 541 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 MTCYBP41-201ENST00000528913 1123 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC11O43248 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC145350.1-201ENST00000567426 208 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 ISCA1P3-201ENST00000577104 373 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC090615.1-201ENST00000577519 154 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC006270.2-201ENST00000578523 652 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 SNORD84-203ENST00000584275 78 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC006130.2-201ENST00000586202 326 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC025946.2-201ENST00000603398 234 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 MAPK10-253ENST00000641010 4072 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 AC116667.1-201ENST00000604855 2072 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC11O43248 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 AC106871.1-201ENST00000568324 3102 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 Y_RNA.18-201ENST00000362461 102 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 SNORA7.2-201ENST00000364446 145 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 RPS15AP38-201ENST00000413110 372 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 CYP4F29P-201ENST00000420685 446 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AC007742.1-201ENST00000425789 329 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 AC234781.2-201ENST00000426370 994 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 ELOCP26-201ENST00000436067 329 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AL365440.1-201ENST00000436135 2167 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 BX322784.1-201ENST00000455793 1077 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 HMGB1P25-201ENST00000468402 607 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
HOXC11O43248 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 AC010460.1-201ENST00000507087 466 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 IFITM8P-201ENST00000522529 394 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 MED28P5-201ENST00000528254 438 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 OR6C7P-201ENST00000547875 934 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 MTND3P12-201ENST00000559068 328 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AC034105.4-201ENST00000568304 277 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 RN7SL703P-201ENST00000578485 302 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXC11O43248 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AC106791.2-201ENST00000604680 391 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AL390208.1-201ENST00000605885 644 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 AL138721.1-201ENST00000616756 179 ntBASIC4.25□□□□□ -1.73
HOXC11O43248 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC11O43248 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC11O43248 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HOXC11O43248 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC11O43248 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HOXC11O43248 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXC11O43248 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HOXC11O43248 AL049780.3-201ENST00000624612 1583 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC11O43248 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 RNA5SP235-201ENST00000365411 114 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXC11O43248 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms