Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 RPL21P66-201ENST00000426566 466 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 TBCAP1-201ENST00000436520 327 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AP001086.1-201ENST00000494882 321 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC010587.2-201ENST00000511727 448 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 RN7SKP244-201ENST00000516513 307 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC091516.1-201ENST00000549191 703 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC010198.2-201ENST00000550612 259 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC126177.3-201ENST00000551839 688 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC053481.3-201ENST00000577881 843 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC080013.3-201ENST00000606839 578 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS28Q9UK41 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC006927.4-201ENST00000639187 543 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS28Q9UK41 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS28Q9UK41 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS28Q9UK41 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC005539.1-201ENST00000443768 1479 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 AC097714.1-201ENST00000511272 1647 ntBASIC4.1□□□□□ -1.75
VPS28Q9UK41 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC116096.1-201ENST00000566804 2314 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL031985.3-201ENST00000565390 2449 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 HSPE1P26-201ENST00000405341 275 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 MIR1284-201ENST00000408337 120 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 RN7SKP56-201ENST00000410513 331 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC092447.6-201ENST00000414578 210 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 Z95327.1-201ENST00000446082 482 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC005297.2-201ENST00000450430 606 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 FABP3P2-201ENST00000453169 399 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 RPL9P32-201ENST00000464118 620 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 TMED11P-201ENST00000479478 690 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 RPS4XP15-201ENST00000489210 795 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC006499.2-201ENST00000513470 337 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 FABP5P12-201ENST00000515543 389 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC093853.1-201ENST00000515689 483 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC022861.1-201ENST00000522981 663 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC024224.1-201ENST00000538284 609 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 MIR4760-201ENST00000585040 80 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC022916.3-201ENST00000592961 742 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL592436.1-201ENST00000605135 558 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 AC231657.1-201ENST00000624313 397 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS28Q9UK41 AL356473.1-201ENST00000406203 1408 ntBASIC4.09□□□□□ -1.75
VPS28Q9UK41 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS28Q9UK41 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.76
VPS28Q9UK41 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
VPS28Q9UK41 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 RN7SKP280-201ENST00000364196 304 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 RNU1-64P-201ENST00000365443 163 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 RPL23AP29-201ENST00000397284 453 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 DHFRP6-201ENST00000401776 268 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 MTATP6P27-201ENST00000416987 621 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 GABPAP-201ENST00000419271 1356 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC099677.1-201ENST00000420575 175 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 CYP4F29P-201ENST00000420685 446 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 HIGD1AP4-201ENST00000430194 280 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 VDAC1P3-201ENST00000434069 851 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 MTND4LP10-201ENST00000435146 291 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms