Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Z99496.1-201ENST00000469424 1477 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 RNA5SP50-201ENST00000363731 107 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 Y_RNA.493-201ENST00000384422 102 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 RSL24D1P1-201ENST00000404972 493 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 RN7SKP111-201ENST00000410349 271 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 HSFY4P-201ENST00000415994 1181 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC092634.6-201ENST00000418558 192 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 MTND2P16-201ENST00000419987 799 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL035410.1-201ENST00000427409 427 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 RPL7P28-201ENST00000437739 740 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 SDR42E1P3-201ENST00000438345 502 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 MTATP6P14-201ENST00000455189 673 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL136126.1-201ENST00000473603 402 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC069528.1-202ENST00000482888 637 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 SLC25A15P5-201ENST00000508033 253 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC023141.12-201ENST00000512399 199 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 SNORA48.10-201ENST00000516965 160 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 IGKV2-26-201ENST00000518305 343 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AP003385.6-201ENST00000531603 374 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 SULT1C2P1-202ENST00000562418 459 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 MIR5186-201ENST00000577504 120 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 VN1R79P-201ENST00000593540 513 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL355812.1-201ENST00000603215 216 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC092954.1-201ENST00000609121 445 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL355365.1-201ENST00000616480 294 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC012314.7-201ENST00000619693 93 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AC032011.1-201ENST00000611703 1549 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 PRO1804-201ENST00000623780 2050 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 RNA5SP197-201ENST00000363357 119 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 RNU1-33P-201ENST00000364249 162 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 SUGT1P1-201ENST00000379514 476 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 RNU6-339P-201ENST00000384310 107 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AL136116.1-201ENST00000403591 381 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 RNA5SP56-201ENST00000410277 118 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 EI24P1-201ENST00000416584 867 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 KRR1P1-201ENST00000419430 803 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AP000907.1-201ENST00000428428 510 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 GTF2IP3-201ENST00000433887 494 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 SEPT7P5-201ENST00000434048 306 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC093155.1-201ENST00000440164 826 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AL357552.1-201ENST00000445254 415 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 NPM1P49-201ENST00000448027 714 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 NCOR1P1-202ENST00000486162 291 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 ACTG1P13-201ENST00000486987 1043 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AP000563.1-201ENST00000490865 758 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC093663.1-201ENST00000497190 394 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 OR5H5P-201ENST00000503164 928 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC026784.1-201ENST00000507986 352 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC005921.1-201ENST00000510589 286 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 MTCO1P30-201ENST00000515244 580 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AP004242.1-201ENST00000533701 349 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.48□□□□□ -1.85
LHX3Q9UBR4 SNRPGP15-201ENST00000600149 222 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AL139022.2-201ENST00000606934 443 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC069200.1-201ENST00000609511 323 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC009237.15-201ENST00000610252 501 ntBASIC3.48□□□□□ -1.85
LHX3Q9UBR4 AC019176.2-201ENST00000611579 315 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms