Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AL356489.2-201ENST00000566968 3528 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 DCAF13P1-201ENST00000495256 1330 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 SNORA70E-201ENST00000384492 135 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 RPS29P4-201ENST00000414733 161 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 RPL7P53-201ENST00000421245 739 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 FTH1P6-201ENST00000430768 320 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 RPL23AP83-201ENST00000434984 473 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL353748.1-201ENST00000440753 474 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL591719.1-201ENST00000444669 744 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AL451050.1-201ENST00000450126 415 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 BX276092.4-201ENST00000452056 248 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC116353.3-201ENST00000511215 249 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC026726.1-201ENST00000512859 601 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC007991.1-201ENST00000522680 631 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 OR4A45P-201ENST00000529954 901 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 PTP4A1P6-201ENST00000531034 478 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC010198.2-201ENST00000550612 259 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 VN1R79P-201ENST00000593540 513 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 MTCO1P14-201ENST00000441695 1559 ntBASIC3.72□□□□□ -1.81
CCDC3Q9BQI4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC3Q9BQI4 AP000776.1-201ENST00000530032 1663 ntBASIC3.71□□□□□ -1.81
CCDC3Q9BQI4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC3Q9BQI4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 FAM133CP-201ENST00000332869 704 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 U3.15-201ENST00000365398 212 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MTND4P13-201ENST00000402078 1023 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AL023807.1-201ENST00000407932 359 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 RNU2-42P-201ENST00000410697 113 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MTND4P22-201ENST00000413116 1169 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC107081.1-201ENST00000414975 361 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC087650.1-201ENST00000431445 468 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 ATP5F1P1-201ENST00000433775 569 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 Z74696.2-201ENST00000436514 498 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MTCO2P20-201ENST00000437339 673 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 EXTL2P1-201ENST00000446218 416 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC013828.1-201ENST00000481845 158 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 RPL7P38-201ENST00000488396 739 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC104090.1-201ENST00000506341 1171 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC110768.1-201ENST00000509222 400 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MTCYBP37-201ENST00000510642 1133 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC104619.4-201ENST00000510773 249 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 RNA5SP164-201ENST00000516533 110 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 LRRC34P1-201ENST00000542742 915 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AGGF1P8-201ENST00000562979 1000 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MIR5187-201ENST00000583479 76 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms