Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
NUP88Q99567 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
NUP88Q99567 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
NUP88Q99567 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.96□□□□□ -1.61
NUP88Q99567 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
NUP88Q99567 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NUP88Q99567 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NUP88Q99567 RNA5SP22-201ENST00000365393 109 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 SNORA70E-201ENST00000384492 135 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 RNY3P10-201ENST00000384764 102 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 U8.14-201ENST00000390843 143 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 RPS24P12-201ENST00000402084 394 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AL355379.1-201ENST00000405542 640 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.96□□□□□ -1.62
NUP88Q99567 PGBD4P8-201ENST00000412993 562 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AL356095.1-201ENST00000417217 199 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 RPL31P45-201ENST00000419532 356 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.96□□□□□ -1.62
NUP88Q99567 RPS27AP14-201ENST00000422868 454 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.96□□□□□ -1.62
NUP88Q99567 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.96□□□□□ -1.62
NUP88Q99567 AC002381.1-201ENST00000447049 280 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC073587.1-201ENST00000447093 876 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.96□□□□□ -1.62
NUP88Q99567 RAP1BP2-201ENST00000478270 544 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.96□□□□□ -1.62
NUP88Q99567 AF213884.1-201ENST00000488102 463 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC021678.1-201ENST00000505195 936 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 KCTD9P2-201ENST00000512203 1013 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 Y_RNA.655-201ENST00000515919 96 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 MIR2116-201ENST00000517221 80 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 IGLV3-26-201ENST00000520756 302 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.96□□□□□ -1.62
NUP88Q99567 AP000873.5-201ENST00000533906 236 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.96□□□□□ -1.62
NUP88Q99567 CENPUP2-201ENST00000555897 1186 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC006362.1-201ENST00000567392 174 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 RPL23AP97-201ENST00000568955 471 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.96□□□□□ -1.62
NUP88Q99567 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC064872.1-201ENST00000604823 1072 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC068276.1-201ENST00000605793 379 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC239868.4-201ENST00000608318 671 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 FAM27D1-201ENST00000612308 341 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AL138721.1-201ENST00000616756 179 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC073968.1-201ENST00000618594 637 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NUP88Q99567 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
NUP88Q99567 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.96□□□□□ -1.62
NUP88Q99567 DDX18P3-201ENST00000404856 2007 ntBASIC4.96□□□□□ -1.62
NUP88Q99567 AC104118.1-201ENST00000607625 1589 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.95□□□□□ -1.62
NUP88Q99567 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
NUP88Q99567 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NUP88Q99567 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NUP88Q99567 RNU5F-6P-201ENST00000362979 116 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 MIR153-1-201ENST00000384914 90 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 RN7SKP33-201ENST00000410942 340 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.95□□□□□ -1.62
NUP88Q99567 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 MTCO2P5-201ENST00000422621 426 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 CYCSP46-201ENST00000423569 204 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 TRIM60P18-201ENST00000441518 828 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 MTCO1P27-201ENST00000448269 226 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 HMGB1P15-201ENST00000453854 435 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 RPS26P28-201ENST00000470806 348 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.95□□□□□ -1.62
NUP88Q99567 AF131216.2-201ENST00000512316 564 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.95□□□□□ -1.62
NUP88Q99567 AC008694.2-201ENST00000517591 306 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 IGKV2D-36-201ENST00000518643 226 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.95□□□□□ -1.62
NUP88Q99567 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.95□□□□□ -1.62
NUP88Q99567 AL121834.1-201ENST00000572284 509 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC4.95□□□□□ -1.62
NUP88Q99567 MIR1254-2-201ENST00000579553 63 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 AL139286.2-201ENST00000606838 396 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.95□□□□□ -1.62
NUP88Q99567 AC009237.17-201ENST00000618111 748 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms