Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.86□□□□□ -1.79
USP28Q96RU2 CKS1BP5-201ENST00000434172 273 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.86□□□□□ -1.79
USP28Q96RU2 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.86□□□□□ -1.79
USP28Q96RU2 AL589880.1-201ENST00000448271 287 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AC112492.1-201ENST00000449607 712 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 HMGN2P7-201ENST00000456186 273 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 HMGN1P18-201ENST00000457642 277 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 CEACAMP4-201ENST00000457676 421 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.86□□□□□ -1.79
USP28Q96RU2 AC007537.2-201ENST00000472093 511 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.86□□□□□ -1.79
USP28Q96RU2 RPS4XP22-201ENST00000480755 780 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AC112198.1-201ENST00000505369 1220 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 RNU6-416P-201ENST00000516265 103 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 snoZ278.1-201ENST00000517059 112 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 RNU4-60P-201ENST00000517239 135 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 IGKV2-26-201ENST00000518305 343 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 DEFB130C-202ENST00000530001 230 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.86□□□□□ -1.79
USP28Q96RU2 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.86□□□□□ -1.79
USP28Q96RU2 AC023538.1-201ENST00000534576 736 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.86□□□□□ -1.79
USP28Q96RU2 AC009712.1-201ENST00000564938 316 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 MTND3P13-201ENST00000574391 343 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USP28Q96RU2 VN1R83P-201ENST00000595685 445 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AC112230.1-201ENST00000604342 547 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AC103710.3-201ENST00000608157 948 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 AL138478.1-201ENST00000612252 832 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 FAM157B-203ENST00000639350 358 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 MTND4P8-201ENST00000514997 1362 ntBASIC3.86□□□□□ -1.79
USP28Q96RU2 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
USP28Q96RU2 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP28Q96RU2 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC017071.1-201ENST00000564407 2204 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
USP28Q96RU2 RNA5SP189-201ENST00000364920 115 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 SNORD6-201ENST00000365444 73 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 MIR525-201ENST00000384978 85 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AL136310.1-201ENST00000404926 654 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 RNU2-6P-201ENST00000411404 190 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 MTCO2P21-201ENST00000419780 677 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AL513175.2-201ENST00000422071 443 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 GTF2IP23-201ENST00000423746 351 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 HMGB3P11-201ENST00000440127 604 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 EEF1A1P39-201ENST00000440791 250 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AL592437.1-201ENST00000443781 492 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USP28Q96RU2 AL136097.1-201ENST00000456945 913 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 USP9YP25-201ENST00000457708 443 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 MTCO2P6-201ENST00000463134 685 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 PRDX3P4-201ENST00000470828 747 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC106707.2-201ENST00000484182 374 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC005921.1-201ENST00000510589 286 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 FABP5P12-201ENST00000515543 389 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 SCARNA20.6-201ENST00000517251 106 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC104027.1-201ENST00000521887 300 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 OR4R3P-201ENST00000525084 838 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC009097.3-201ENST00000563557 1018 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC106785.1-201ENST00000565935 262 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 AC119501.1-201ENST00000603646 475 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 AP000238.1-201ENST00000608759 426 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 VN1R74P-201ENST00000613259 503 ntBASIC3.85□□□□□ -1.79
USP28Q96RU2 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.85□□□□□ -1.79
USP28Q96RU2 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USP28Q96RU2 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USP28Q96RU2 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
USP28Q96RU2 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
USP28Q96RU2 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
USP28Q96RU2 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP28Q96RU2 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
USP28Q96RU2 RNU1-70P-201ENST00000362618 164 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AL359837.1-201ENST00000381357 287 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RNU6-636P-201ENST00000384598 107 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.84□□□□□ -1.79
USP28Q96RU2 SKINT1L-201ENST00000401057 817 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RN7SKP111-201ENST00000410349 271 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RNU6-77P-201ENST00000410554 91 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RNU2-37P-201ENST00000410695 177 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RNU6-575P-201ENST00000411326 105 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 RPL22P18-201ENST00000417197 377 ntBASIC3.84□□□□□ -1.79
USP28Q96RU2 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.84□□□□□ -1.79
USP28Q96RU2 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.84□□□□□ -1.79
USP28Q96RU2 CETN4P-201ENST00000432407 469 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms