Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 BX649567.1-201ENST00000642071 1134 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AL161912.2-201ENST00000565707 3007 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC073073.2-201ENST00000609827 2578 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC024341.1-201ENST00000526444 1552 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL359837.1-201ENST00000381357 287 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RNU11-4P-201ENST00000391149 133 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RPS15AP38-201ENST00000413110 372 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 UBE2D3P2-201ENST00000424409 445 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RNA5SP310-201ENST00000459084 116 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 SNORA84-201ENST00000459229 133 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC084024.2-201ENST00000503480 791 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 BOLA3P3-201ENST00000505182 232 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC091860.1-201ENST00000505723 432 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC010625.1-201ENST00000511296 403 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 NPM1P41-201ENST00000512920 831 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-27P-201ENST00000516146 107 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-1095P-201ENST00000516148 108 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-885P-201ENST00000516607 104 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RN7SKP60-201ENST00000516985 239 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 OR5AP1P-201ENST00000529730 940 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL139174.1-201ENST00000531489 886 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 HSPE1P5-201ENST00000561489 272 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 KLKP1-201ENST00000595979 403 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL365503.1-201ENST00000605247 905 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC092953.2-201ENST00000608000 699 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RMST_8.1-201ENST00000610287 165 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 MIR6868-201ENST00000611215 58 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC008083.4-201ENST00000615076 444 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL356094.1-201ENST00000624663 1212 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 CYP3A51P-201ENST00000633513 256 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 RIOK3P1-201ENST00000418778 1528 ntBASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.47□□□□□ -1.85
ZNF540Q8NDQ6 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.85
ZNF540Q8NDQ6 AC007496.3-201ENST00000624987 3443 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-283P-201ENST00000364788 107 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 SNORD51-201ENST00000384320 80 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 MIR200C-201ENST00000384980 68 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RPL32P23-201ENST00000397237 405 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 PTMAP2-201ENST00000397627 327 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RPS4XP3-201ENST00000398541 413 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RPL31P54-201ENST00000429803 370 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AL050321.1-201ENST00000432363 400 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC004866.2-201ENST00000438285 481 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AL158053.1-201ENST00000441503 453 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AL121871.1-201ENST00000443413 436 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RPL23AP14-201ENST00000468281 468 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RPL30P14-201ENST00000482744 348 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 RPS3AP50-201ENST00000487064 803 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC093278.1-201ENST00000494700 600 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 MTCO2P9-201ENST00000503214 694 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 PCBP2P3-201ENST00000509726 843 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC023632.4-201ENST00000517783 191 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC087369.1-201ENST00000520775 996 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC068339.2-201ENST00000534395 618 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC006518.2-201ENST00000542513 940 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC006213.4-201ENST00000616184 634 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AC022509.4-201ENST00000621404 572 ntBASIC3.46□□□□□ -1.86
ZNF540Q8NDQ6 AP000720.1-201ENST00000625091 483 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms