Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
USP39Q53GS9 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
USP39Q53GS9 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
USP39Q53GS9 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.86□□□□□ -1.63
USP39Q53GS9 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 SNORD56.2-201ENST00000363242 71 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
USP39Q53GS9 RNU6-1103P-201ENST00000384150 107 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USP39Q53GS9 ZNF90P2-204ENST00000419323 1075 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AC062016.2-201ENST00000420950 676 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 MTND2P23-201ENST00000422990 651 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 CHIAP3-201ENST00000423668 1133 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AL513185.2-201ENST00000425543 193 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC009961.2-201ENST00000435771 251 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 PPIAP17-201ENST00000438507 471 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 YWHAQP9-201ENST00000445891 512 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 NIPA2P5-201ENST00000452282 464 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
USP39Q53GS9 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 KCTD9P5-201ENST00000504141 1170 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC108471.1-201ENST00000513977 287 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 RNA5SP135-201ENST00000517019 125 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AP001189.2-201ENST00000527320 189 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AL110118.1-201ENST00000553543 400 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AL512360.1-201ENST00000555346 234 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC010424.2-201ENST00000607594 443 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AC015914.2-201ENST00000618167 288 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.86□□□□□ -1.63
USP39Q53GS9 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.86□□□□□ -1.63
USP39Q53GS9 OR5BR1P-201ENST00000524992 1330 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.86□□□□□ -1.63
USP39Q53GS9 CDR1-202ENST00000625883 1485 ntBASIC4.86□□□□□ -1.63
USP39Q53GS9 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.86□□□□□ -1.63
USP39Q53GS9 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.86□□□□□ -1.63
USP39Q53GS9 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.86□□□□□ -1.63
USP39Q53GS9 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP39Q53GS9 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
USP39Q53GS9 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.85□□□□□ -1.63
USP39Q53GS9 RNU6-462P-201ENST00000362659 105 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 RNU6-1066P-201ENST00000363573 105 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 RNA5SP447-201ENST00000363749 119 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
USP39Q53GS9 U3.30-201ENST00000391308 210 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 SNRPEP2-201ENST00000397592 279 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 RN7SKP222-201ENST00000410651 315 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 ELOCP19-201ENST00000411919 318 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 BX295541.1-201ENST00000417774 250 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.85□□□□□ -1.63
USP39Q53GS9 AL513175.1-201ENST00000431492 780 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.85□□□□□ -1.63
USP39Q53GS9 RABEPKP1-201ENST00000440529 1026 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.85□□□□□ -1.63
USP39Q53GS9 MTND6P13-201ENST00000443510 523 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.85□□□□□ -1.63
USP39Q53GS9 FABP3P2-201ENST00000453169 399 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 RNU6-1218P-201ENST00000458990 108 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
USP39Q53GS9 AC083829.1-201ENST00000503756 657 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.85□□□□□ -1.63
USP39Q53GS9 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.85□□□□□ -1.63
USP39Q53GS9 AC048346.1-201ENST00000510247 144 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC108064.1-201ENST00000513791 460 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 RNU6-885P-201ENST00000516607 104 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.85□□□□□ -1.63
USP39Q53GS9 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.85□□□□□ -1.63
USP39Q53GS9 OR8A2P-201ENST00000528631 952 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 OR4A12P-201ENST00000530847 918 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 SLC2A13P1-201ENST00000531560 322 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 PDCD5P1-201ENST00000543528 309 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC093027.1-201ENST00000546698 429 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP39Q53GS9 BNIP3P5-201ENST00000562290 498 ntBASIC4.85□□□□□ -1.63
USP39Q53GS9 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.85□□□□□ -1.63
USP39Q53GS9 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms