Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC024224.1-201ENST00000538284 609 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC109446.2-201ENST00000567872 497 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC090616.2-202ENST00000584248 222 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC020914.6-201ENST00000594327 272 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC080013.4-201ENST00000607624 649 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC103858.2-201ENST00000621471 543 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 CYP3A51P-201ENST00000633513 256 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 NMD3P1-201ENST00000439704 1488 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 Y_RNA.169-201ENST00000363745 96 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 MIR153-1-201ENST00000384914 90 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC016769.3-201ENST00000396562 315 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 MIR1250-201ENST00000408098 113 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC011233.1-201ENST00000422812 283 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 CYCSP32-201ENST00000440548 321 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 NOTCH2P1-201ENST00000443481 624 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 Z83846.1-201ENST00000446798 265 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 ARPC3P5-201ENST00000448802 534 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 RPL7P22-201ENST00000466005 733 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC093281.2-201ENST00000510153 597 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC026412.2-201ENST00000512270 1075 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC118465.1-201ENST00000513820 1271 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC090151.1-201ENST00000520784 730 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC090819.1-201ENST00000523800 1111 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 HMGB3P26-201ENST00000560051 582 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 LARP7P2-201ENST00000575306 125 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 MIR5195-201ENST00000583555 115 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC006539.2-201ENST00000601729 572 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AL596327.1-201ENST00000603629 213 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AP000811.1-201ENST00000603803 651 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC018714.1-201ENST00000605028 208 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC005000.2-201ENST00000605468 310 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AP002360.3-201ENST00000607673 710 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC097065.2-201ENST00000608159 533 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC010608.2-201ENST00000624830 470 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC007671.2-201ENST00000637344 619 ntBASIC4.07□□□□□ -1.76
COL28A1Q2UY09 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.07□□□□□ -1.76
COL28A1Q2UY09 AC105074.1-201ENST00000623380 3095 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 MTCO1P23-201ENST00000415223 1526 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL139095.3-201ENST00000419672 1203 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL391219.1-201ENST00000422570 483 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC234781.2-201ENST00000426370 994 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms