Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA4Q00056 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
HOXA4Q00056 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA4Q00056 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA4Q00056 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXA4Q00056 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA4Q00056 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.06□□□□□ -1.76
HOXA4Q00056 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 A2MP1-204ENST00000566278 4130 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 SNORD82-201ENST00000365530 70 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 Y_RNA.381-201ENST00000365666 102 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA4Q00056 RNU6-877P-201ENST00000383868 107 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 RNU6-1207P-201ENST00000384343 107 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 BTBD10P2-201ENST00000404779 676 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 RN7SKP285-201ENST00000410137 318 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 NUP35P2-201ENST00000416748 943 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC009302.1-201ENST00000417147 390 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 TPT1P14-201ENST00000448018 505 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AURKAPS2-201ENST00000454983 333 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AP1S2P1-201ENST00000457344 379 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC022034.3-201ENST00000471393 478 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC093853.1-201ENST00000515689 483 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 RNU6-1281P-201ENST00000516223 105 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 RNU6-709P-201ENST00000517257 104 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AP003034.1-201ENST00000534621 422 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC092470.1-201ENST00000546187 132 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AL512310.1-201ENST00000548639 172 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AL356432.3-201ENST00000568952 465 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 CYCSP40-201ENST00000575927 294 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA4Q00056 MIR4480-201ENST00000582492 71 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 FGF7P1-201ENST00000582820 288 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC011487.3-201ENST00000593607 453 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC068790.5-201ENST00000602741 355 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC073091.2-201ENST00000603205 907 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC008782.1-201ENST00000603386 430 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC121334.2-201ENST00000605387 271 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 AC100827.5-201ENST00000615883 426 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 AC012150.2-201ENST00000621300 544 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA4Q00056 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 LINC01355-201ENST00000566551 5444 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA4Q00056 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA4Q00056 MAPK10-320ENST00000641462 6696 ntBASIC4.06□□□□□ -1.76
HOXA4Q00056 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA4Q00056 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA4Q00056 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA4Q00056 MTND4P29-201ENST00000503122 1372 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA4Q00056 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA4Q00056 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.05□□□□□ -1.76
HOXA4Q00056 AL122126.1-201ENST00000546905 1318 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 Y_RNA.160-201ENST00000363677 92 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA4Q00056 RNU6-878P-201ENST00000384578 110 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 Z97832.1-201ENST00000402490 328 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 AL603766.1-201ENST00000407763 664 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 RNU2-41P-201ENST00000410991 178 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA4Q00056 E2F6P2-201ENST00000420708 748 ntBASIC4.05□□□□□ -1.76
HOXA4Q00056 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms