Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 U2.19-201ENST00000618602 191 ntBASIC2.57□□□□□ -2
VCANP13611 RNU2-1-201ENST00000618664 191 ntBASIC2.57□□□□□ -2
VCANP13611 U2.6-201ENST00000619225 191 ntBASIC2.57□□□□□ -2
VCANP13611 U2.5-201ENST00000619465 191 ntBASIC2.57□□□□□ -2
VCANP13611 U2.10-201ENST00000620268 191 ntBASIC2.57□□□□□ -2
VCANP13611 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.57□□□□□ -2
VCANP13611 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
VCANP13611 AC093908.1-201ENST00000623125 8092 ntBASIC2.57□□□□□ -2
VCANP13611 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC2.57□□□□□ -2
VCANP13611 HMGN1P18-201ENST00000457642 277 ntBASIC2.57□□□□□ -2
VCANP13611 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.57□□□□□ -2
VCANP13611 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.57□□□□□ -2
VCANP13611 AC008507.1-201ENST00000587506 734 ntBASIC2.57□□□□□ -2
VCANP13611 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.57□□□□□ -2
VCANP13611 APOOP1-201ENST00000604695 592 ntBASIC2.57□□□□□ -2
VCANP13611 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VCANP13611 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC2.56□□□□□ -2
VCANP13611 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VCANP13611 OR52B1P-201ENST00000316506 909 ntBASIC2.56□□□□□ -2
VCANP13611 MIR30E-201ENST00000362104 92 ntBASIC2.56□□□□□ -2
VCANP13611 LUZP4P1-201ENST00000415420 344 ntBASIC2.56□□□□□ -2
VCANP13611 AC021733.2-201ENST00000518830 497 ntBASIC2.56□□□□□ -2
VCANP13611 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.56□□□□□ -2
VCANP13611 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.56□□□□□ -2
VCANP13611 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.56□□□□□ -2
VCANP13611 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VCANP13611 FAR1P1-201ENST00000427163 934 ntBASIC2.56□□□□□ -2
VCANP13611 AC072039.1-201ENST00000477611 581 ntBASIC2.56□□□□□ -2
VCANP13611 HSPE1P18-201ENST00000517602 280 ntBASIC2.56□□□□□ -2
VCANP13611 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.56□□□□□ -2
VCANP13611 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.56□□□□□ -2
VCANP13611 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC2.56□□□□□ -2
VCANP13611 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
VCANP13611 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.56□□□□□ -2
VCANP13611 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.55□□□□□ -2
VCANP13611 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.55□□□□□ -2
VCANP13611 HMGB3P11-201ENST00000440127 604 ntBASIC2.55□□□□□ -2
VCANP13611 ST13P20-201ENST00000447996 1065 ntBASIC2.55□□□□□ -2
VCANP13611 OR5AK3P-201ENST00000527486 1297 ntBASIC2.55□□□□□ -2
VCANP13611 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.55□□□□□ -2
VCANP13611 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC2.55□□□□□ -2
VCANP13611 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.55□□□□□ -2
VCANP13611 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VCANP13611 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.55□□□□□ -2
VCANP13611 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.55□□□□□ -2
VCANP13611 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.55□□□□□ -2
VCANP13611 ADAM3A-203ENST00000461344 2157 ntBASIC2.55□□□□□ -2
VCANP13611 RNY1-201ENST00000364228 113 ntBASIC2.55□□□□□ -2
VCANP13611 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC2.55□□□□□ -2
VCANP13611 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.55□□□□□ -2
VCANP13611 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.55□□□□□ -2
VCANP13611 AC103858.2-201ENST00000621471 543 ntBASIC2.55□□□□□ -2
VCANP13611 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC2.55□□□□□ -2
VCANP13611 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VCANP13611 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC2.54□□□□□ -2
VCANP13611 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC2.54□□□□□ -2
VCANP13611 RNU1-89P-201ENST00000384592 164 ntBASIC2.54□□□□□ -2
VCANP13611 SNORA46-201ENST00000384762 135 ntBASIC2.54□□□□□ -2
VCANP13611 NPM1P38-201ENST00000403835 865 ntBASIC2.54□□□□□ -2
VCANP13611 AC245054.2-201ENST00000415639 319 ntBASIC2.54□□□□□ -2
VCANP13611 NANOGP5-201ENST00000424456 877 ntBASIC2.54□□□□□ -2
VCANP13611 BX679664.1-201ENST00000434429 253 ntBASIC2.54□□□□□ -2
VCANP13611 AC105918.1-201ENST00000474399 838 ntBASIC2.54□□□□□ -2
VCANP13611 RPL36AP51-201ENST00000487216 318 ntBASIC2.54□□□□□ -2
VCANP13611 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC2.54□□□□□ -2
VCANP13611 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC2.54□□□□□ -2
VCANP13611 NPM1P35-201ENST00000533043 868 ntBASIC2.54□□□□□ -2
VCANP13611 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.54□□□□□ -2
VCANP13611 AC096644.4-201ENST00000563417 2912 ntBASIC2.54□□□□□ -2
VCANP13611 RNA5SP217-201ENST00000515959 91 ntBASIC2.54□□□□□ -2
VCANP13611 AC135628.1-201ENST00000568867 534 ntBASIC2.54□□□□□ -2
VCANP13611 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.54□□□□□ -2
VCANP13611 AL355493.4-201ENST00000618530 292 ntBASIC2.54□□□□□ -2
VCANP13611 AC002064.3-201ENST00000623448 346 ntBASIC2.54□□□□□ -2
VCANP13611 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VCANP13611 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VCANP13611 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.54□□□□□ -2
VCANP13611 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
VCANP13611 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VCANP13611 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VCANP13611 Z82217.1-201ENST00000625157 8149 ntBASIC2.53□□□□□ -2
VCANP13611 SNORD56.3-201ENST00000363507 71 ntBASIC2.53□□□□□ -2
VCANP13611 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.53□□□□□ -2
VCANP13611 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.53□□□□□ -2
VCANP13611 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.53□□□□□ -2
VCANP13611 AL359715.5-201ENST00000623431 443 ntBASIC2.53□□□□□ -2
VCANP13611 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC2.53□□□□□ -2
VCANP13611 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.53□□□□□ -2
VCANP13611 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC2.53□□□□□ -2
VCANP13611 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.53□□□□□ -2
VCANP13611 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC2.53□□□□□ -2
VCANP13611 HPRT1P3-201ENST00000539521 576 ntBASIC2.53□□□□□ -2
VCANP13611 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.53□□□□□ -2
VCANP13611 AC006111.3-201ENST00000622137 383 ntBASIC2.53□□□□□ -2
VCANP13611 AL353684.1-201ENST00000622677 1120 ntBASIC2.53□□□□□ -2
VCANP13611 AC016542.2-201ENST00000624201 619 ntBASIC2.53□□□□□ -2
VCANP13611 MUC2-202ENST00000613187 4845 ntBASIC2.53□□□□□ -2
VCANP13611 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VCANP13611 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC2.53□□□□□ -2
VCANP13611 AC025125.1-201ENST00000624743 1922 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms