Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL117351.1-201ENST00000438864 766 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AL138878.2-201ENST00000440581 1241 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 DHFRP3-201ENST00000455595 559 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.2□□□□□ -1.58
HMGB1P09429 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.2□□□□□ -1.58
HMGB1P09429 SNORD121B-201ENST00000458838 81 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HMGB1P09429 RPS26P28-201ENST00000470806 348 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AC021382.1-201ENST00000483523 359 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.2□□□□□ -1.58
HMGB1P09429 AC034159.1-201ENST00000513885 583 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 RNU5A-4P-201ENST00000516588 111 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC5.2□□□□□ -1.58
HMGB1P09429 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.2□□□□□ -1.58
HMGB1P09429 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.2□□□□□ -1.58
HMGB1P09429 AC012417.1-201ENST00000582307 1039 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AL391001.1-201ENST00000602747 715 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AC243312.2-201ENST00000623340 601 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 AC009039.2-201ENST00000624524 529 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HMGB1P09429 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HMGB1P09429 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGB1P09429 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGB1P09429 AC012321.1-201ENST00000561622 1588 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HMGB1P09429 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HMGB1P09429 AC090740.1-201ENST00000623193 2262 ntBASIC5.2□□□□□ -1.58
HMGB1P09429 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGB1P09429 LARP1BP1-201ENST00000506036 1359 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 FAM3C2-201ENST00000312214 681 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 RNU6-76P-201ENST00000384060 104 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 RNU1-101P-201ENST00000391171 127 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 RPS4XP3-201ENST00000398541 413 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 PPIAP31-201ENST00000405422 495 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 MTCO2P21-201ENST00000419780 677 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AL356387.2-201ENST00000422272 243 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 RBMY1KP-201ENST00000423480 476 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGB1P09429 RPL23AP1-201ENST00000428990 471 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 RSL24D1P3-201ENST00000449255 495 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 NANOGP10-201ENST00000453325 895 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AL359385.1-201ENST00000456509 365 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 SNORD11.1-201ENST00000459482 85 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AC020898.1-201ENST00000474167 787 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 RPL30P14-201ENST00000482744 348 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 RN7SKP92-201ENST00000517266 244 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 PHBP17-201ENST00000528576 541 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC5.19□□□□□ -1.58
HMGB1P09429 OR5AP1P-201ENST00000529730 940 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGB1P09429 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC5.19□□□□□ -1.58
HMGB1P09429 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC5.19□□□□□ -1.58
HMGB1P09429 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 AL031281.1-201ENST00000604049 488 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.19□□□□□ -1.58
HMGB1P09429 AC091046.2-201ENST00000620775 665 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AC019278.1-201ENST00000623516 479 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AC055839.1-201ENST00000634467 498 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AC103706.2-201ENST00000638080 240 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HMGB1P09429 AC012618.3-205ENST00000637896 1496 ntBASIC5.19□□□□□ -1.58
HMGB1P09429 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HMGB1P09429 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
HMGB1P09429 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
HMGB1P09429 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGB1P09429 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGB1P09429 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGB1P09429 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGB1P09429 OR5P1P-201ENST00000299512 925 ntBASIC5.18□□□□□ -1.58
HMGB1P09429 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGB1P09429 RNU1-15P-201ENST00000353977 144 ntBASIC5.18□□□□□ -1.58
HMGB1P09429 RNU6-359P-201ENST00000365466 108 ntBASIC5.18□□□□□ -1.58
HMGB1P09429 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGB1P09429 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGB1P09429 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGB1P09429 RNA5SP146-201ENST00000410743 123 ntBASIC5.18□□□□□ -1.58
HMGB1P09429 MIR1911-201ENST00000410783 80 ntBASIC5.18□□□□□ -1.58
HMGB1P09429 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGB1P09429 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms