Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MTND5P19-201ENST00000424872 1794 ntBASIC3.13□□□□□ -1.91
APOEP02649 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
APOEP02649 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 AC108206.1-201ENST00000570186 4159 ntBASIC3.13□□□□□ -1.91
APOEP02649 GNG5P1-201ENST00000255500 204 ntBASIC3.13□□□□□ -1.91
APOEP02649 RNU6-1293P-201ENST00000384077 107 ntBASIC3.13□□□□□ -1.91
APOEP02649 MIR128-1-201ENST00000384921 82 ntBASIC3.13□□□□□ -1.91
APOEP02649 AL355379.1-201ENST00000405542 640 ntBASIC3.13□□□□□ -1.91
APOEP02649 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.13□□□□□ -1.91
APOEP02649 RPL7P10-201ENST00000417407 739 ntBASIC3.13□□□□□ -1.91
APOEP02649 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.13□□□□□ -1.91
APOEP02649 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.13□□□□□ -1.91
APOEP02649 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 AC140076.1-201ENST00000449897 361 ntBASIC3.13□□□□□ -1.91
APOEP02649 BX276092.4-201ENST00000452056 248 ntBASIC3.13□□□□□ -1.91
APOEP02649 AL590639.1-201ENST00000456484 337 ntBASIC3.13□□□□□ -1.91
APOEP02649 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 RN7SL20P-201ENST00000488827 297 ntBASIC3.13□□□□□ -1.91
APOEP02649 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 AC005351.1-201ENST00000511152 786 ntBASIC3.13□□□□□ -1.91
APOEP02649 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.13□□□□□ -1.91
APOEP02649 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.13□□□□□ -1.91
APOEP02649 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.13□□□□□ -1.91
APOEP02649 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.13□□□□□ -1.91
APOEP02649 AC231759.1-201ENST00000616455 597 ntBASIC3.13□□□□□ -1.91
APOEP02649 RNU6-156P-201ENST00000621869 107 ntBASIC3.13□□□□□ -1.91
APOEP02649 AC090617.7-201ENST00000623952 126 ntBASIC3.13□□□□□ -1.91
APOEP02649 AC011978.2-201ENST00000569835 2054 ntBASIC3.13□□□□□ -1.91
APOEP02649 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.13□□□□□ -1.91
APOEP02649 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.13□□□□□ -1.91
APOEP02649 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
APOEP02649 ZNF833P-201ENST00000424938 1494 ntBASIC3.12□□□□□ -1.91
APOEP02649 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.12□□□□□ -1.91
APOEP02649 AC073325.2-201ENST00000339545 159 ntBASIC3.12□□□□□ -1.91
APOEP02649 RPL31P1-201ENST00000398116 372 ntBASIC3.12□□□□□ -1.91
APOEP02649 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.12□□□□□ -1.91
APOEP02649 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.12□□□□□ -1.91
APOEP02649 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.12□□□□□ -1.91
APOEP02649 AC244098.2-201ENST00000422068 99 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC006994.1-201ENST00000438212 839 ntBASIC3.12□□□□□ -1.91
APOEP02649 NANOGNBP1-201ENST00000448444 480 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC112492.1-201ENST00000449607 712 ntBASIC3.12□□□□□ -1.91
APOEP02649 SETP6-201ENST00000479329 568 ntBASIC3.12□□□□□ -1.91
APOEP02649 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.12□□□□□ -1.91
APOEP02649 AC104986.1-201ENST00000517978 436 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.12□□□□□ -1.91
APOEP02649 AC239860.2-201ENST00000525886 270 ntBASIC3.12□□□□□ -1.91
APOEP02649 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.12□□□□□ -1.91
APOEP02649 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.12□□□□□ -1.91
APOEP02649 AC022080.3-201ENST00000544433 482 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC107016.2-201ENST00000547968 190 ntBASIC3.12□□□□□ -1.91
APOEP02649 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.12□□□□□ -1.91
APOEP02649 AL121603.1-201ENST00000553815 142 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC055876.1-202ENST00000567053 138 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.12□□□□□ -1.91
APOEP02649 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
APOEP02649 AP004372.1-201ENST00000604842 844 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC005000.2-201ENST00000605468 310 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC131902.3-201ENST00000611767 581 ntBASIC3.12□□□□□ -1.91
APOEP02649 U6.48-201ENST00000618523 106 ntBASIC3.12□□□□□ -1.91
APOEP02649 AC073348.1-201ENST00000623002 331 ntBASIC3.12□□□□□ -1.91
APOEP02649 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.12□□□□□ -1.91
APOEP02649 SNORA48.2-201ENST00000390926 124 ntBASIC3.11□□□□□ -1.91
APOEP02649 NUP35P2-201ENST00000416748 943 ntBASIC3.11□□□□□ -1.91
APOEP02649 TOMM22P1-201ENST00000418578 312 ntBASIC3.11□□□□□ -1.91
APOEP02649 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.11□□□□□ -1.91
APOEP02649 RPL35AP12-201ENST00000425362 338 ntBASIC3.11□□□□□ -1.91
APOEP02649 OR51AB1P-201ENST00000429046 620 ntBASIC3.11□□□□□ -1.91
APOEP02649 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.11□□□□□ -1.91
APOEP02649 RPL21P104-201ENST00000464143 478 ntBASIC3.11□□□□□ -1.91
APOEP02649 AC117440.1-201ENST00000474107 571 ntBASIC3.11□□□□□ -1.91
APOEP02649 RPS29P2-201ENST00000479278 136 ntBASIC3.11□□□□□ -1.91
APOEP02649 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
APOEP02649 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.11□□□□□ -1.91
APOEP02649 AC118282.1-201ENST00000506408 765 ntBASIC3.11□□□□□ -1.91
APOEP02649 AC119751.1-201ENST00000513357 765 ntBASIC3.11□□□□□ -1.91
APOEP02649 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.11□□□□□ -1.91
APOEP02649 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.11□□□□□ -1.91
APOEP02649 AL049874.4-201ENST00000557593 255 ntBASIC3.11□□□□□ -1.91
APOEP02649 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.11□□□□□ -1.91
APOEP02649 SNRPGP15-201ENST00000600149 222 ntBASIC3.11□□□□□ -1.91
APOEP02649 AC135803.1-201ENST00000608748 565 ntBASIC3.11□□□□□ -1.91
APOEP02649 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
APOEP02649 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
APOEP02649 ATP5A1P2-202ENST00000616464 443 ntBASIC3.11□□□□□ -1.91
APOEP02649 AP004607.9-201ENST00000618202 316 ntBASIC3.11□□□□□ -1.91
APOEP02649 MIR4496-201ENST00000635896 61 ntBASIC3.11□□□□□ -1.91
APOEP02649 LRRC77P-213ENST00000637727 880 ntBASIC3.11□□□□□ -1.91
APOEP02649 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
APOEP02649 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
APOEP02649 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
APOEP02649 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
APOEP02649 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
APOEP02649 AL049737.1-201ENST00000413920 1403 ntBASIC3.1□□□□□ -1.91
APOEP02649 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms