Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Z99129.1-201ENST00000612510 255 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC009509.4-201ENST00000619202 509 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.77□□□□□ -1.65
COL3A1P02461 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL3A1P02461 OR4G2P-201ENST00000328113 903 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 NACA3P-201ENST00000359690 648 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 MCTS2P-201ENST00000394552 546 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 RNU2-17P-201ENST00000410290 190 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 RNU6-920P-201ENST00000410926 92 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC007899.1-201ENST00000412776 775 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.77□□□□□ -1.65
COL3A1P02461 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.77□□□□□ -1.65
COL3A1P02461 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC091862.1-201ENST00000438016 1100 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.77□□□□□ -1.65
COL3A1P02461 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.77□□□□□ -1.65
COL3A1P02461 AL606662.1-201ENST00000445763 553 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC244505.3-201ENST00000454598 187 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 OR4G11P-201ENST00000492842 939 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC112184.1-201ENST00000505179 312 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.77□□□□□ -1.65
COL3A1P02461 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.77□□□□□ -1.65
COL3A1P02461 OR5B10P-201ENST00000532869 642 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.77□□□□□ -1.65
COL3A1P02461 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 ZNF519P3-201ENST00000557158 1032 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.77□□□□□ -1.65
COL3A1P02461 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 ISCA1P3-201ENST00000577104 373 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC067852.3-201ENST00000589177 561 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC006539.2-201ENST00000601729 572 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AL137072.1-201ENST00000603444 466 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 AL160281.1-201ENST00000605307 311 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC096577.2-201ENST00000611455 153 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 AC008498.1-201ENST00000613012 531 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC012314.7-201ENST00000619693 93 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 AC007656.2-201ENST00000624902 4547 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL3A1P02461 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL3A1P02461 AC092447.7-201ENST00000422212 1621 ntBASIC4.77□□□□□ -1.65
COL3A1P02461 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL3A1P02461 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.77□□□□□ -1.65
COL3A1P02461 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL3A1P02461 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.76□□□□□ -1.65
COL3A1P02461 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 AL365440.1-201ENST00000436135 2167 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 Y_RNA.465-201ENST00000384293 102 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 RNU6-114P-201ENST00000384704 105 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 RNU6-932P-201ENST00000391108 106 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 HMGB1P10-201ENST00000395823 563 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC007068.1-201ENST00000396690 844 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.76□□□□□ -1.65
COL3A1P02461 MTND1P2-201ENST00000430604 821 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.76□□□□□ -1.65
COL3A1P02461 AC005178.1-201ENST00000508392 440 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.76□□□□□ -1.65
COL3A1P02461 AC021146.7-201ENST00000509604 775 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.76□□□□□ -1.65
COL3A1P02461 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.76□□□□□ -1.65
COL3A1P02461 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.76□□□□□ -1.65
COL3A1P02461 UBE2NP1-201ENST00000545592 458 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.76□□□□□ -1.65
COL3A1P02461 AC011471.1-201ENST00000585766 187 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.76□□□□□ -1.65
COL3A1P02461 AP004372.1-201ENST00000604842 844 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC096553.1-201ENST00000605169 829 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC091946.2-201ENST00000606105 291 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC007742.2-201ENST00000618226 398 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC069209.1-201ENST00000619282 651 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AL357559.1-201ENST00000622228 274 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 AC032011.1-201ENST00000611703 1549 ntBASIC4.76□□□□□ -1.65
COL3A1P02461 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
COL3A1P02461 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms