Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXC11O43248 AL357080.1-201ENST00000617394 239 ntBASIC4.28□□□□□ -1.72
HOXC11O43248 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
HOXC11O43248 AC034229.5-201ENST00000624258 185 ntBASIC4.28□□□□□ -1.72
HOXC11O43248 CRYM-AS1-204ENST00000637983 556 ntBASIC4.28□□□□□ -1.72
HOXC11O43248 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXC11O43248 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC11O43248 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXC11O43248 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.73
HOXC11O43248 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 SNORD74.4-201ENST00000364129 80 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 RNU6-1200P-201ENST00000384162 107 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HOXC11O43248 AF228730.1-201ENST00000397972 663 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 AL590084.2-201ENST00000401481 382 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 RAP1BP1-201ENST00000412709 553 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 AL161631.1-201ENST00000417933 486 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC092447.3-201ENST00000426027 686 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 SDCBPP1-201ENST00000440192 890 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 AL445669.2-201ENST00000454425 421 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 VN1R40P-201ENST00000455196 941 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 AC068587.2-201ENST00000478386 781 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 VN1R105P-201ENST00000486595 910 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC023424.2-201ENST00000493479 777 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC078918.1-201ENST00000498515 228 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 MTCYBP43-201ENST00000513621 740 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXC11O43248 RNU2-58P-201ENST00000516403 183 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 DUXAP5-201ENST00000529668 529 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 AL121603.1-201ENST00000553815 142 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC11O43248 AC012182.1-201ENST00000570133 895 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC053481.4-201ENST00000583164 216 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC021171.1-201ENST00000603137 706 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC11O43248 MIR6875-201ENST00000617506 72 ntBASIC4.27□□□□□ -1.73
HOXC11O43248 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HOXC11O43248 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.27□□□□□ -1.73
HOXC11O43248 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC11O43248 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC11O43248 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC097504.1-201ENST00000515103 2415 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC11O43248 AC105074.1-201ENST00000623380 3095 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.26□□□□□ -1.73
HOXC11O43248 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
HOXC11O43248 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC11O43248 OR5H2-201ENST00000355273 945 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RNU6-462P-201ENST00000362659 105 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RNA5SP189-201ENST00000364920 115 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RNU6-1181P-201ENST00000384191 106 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 MIR513A2-201ENST00000385249 127 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RNU6-952P-201ENST00000391164 108 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 ATP5F1P3-201ENST00000397213 657 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AL138880.1-201ENST00000405824 642 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 PIGPP2-201ENST00000411569 458 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HOXC11O43248 OR8F1P-201ENST00000425243 930 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 NANOGP6-201ENST00000429190 847 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 TXNL1P1-201ENST00000429528 554 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 CETN4P-201ENST00000432407 469 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC11O43248 MUPP-201ENST00000438111 566 ntBASIC4.26□□□□□ -1.73
HOXC11O43248 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms