Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC104308.1-201ENST00000454621 333 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 MTCO3P2-201ENST00000457365 171 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 HMGN2P13-201ENST00000476476 274 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 MTND3P3-201ENST00000505004 126 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC016550.1-201ENST00000505348 785 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC118282.2-201ENST00000508739 374 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 ARL2BPP5-201ENST00000523141 481 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 MTCO1P40-201ENST00000574371 625 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 GAS5-AS1-201ENST00000602767 694 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AP002906.1-201ENST00000603405 233 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC024941.1-201ENST00000612250 334 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL355810.1-201ENST00000614629 552 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL109620.1-201ENST00000618738 1197 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL731566.2-201ENST00000618971 317 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC092326.2-201ENST00000624772 1561 ntBASIC3.59□□□□□ -1.84
VPS39Q96JC1 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC068647.1-201ENST00000489539 2265 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS39Q96JC1 RNU6-932P-201ENST00000391108 106 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 RN7SKP156-201ENST00000410308 342 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 RNU6-712P-201ENST00000410558 100 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC245054.1-201ENST00000420944 258 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 PABPC1P3-201ENST00000469174 459 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC023598.1-201ENST00000472521 361 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC108078.3-201ENST00000502633 489 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC048346.1-201ENST00000510247 144 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC109471.1-201ENST00000511631 612 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC007991.1-201ENST00000522680 631 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AP003066.2-201ENST00000529375 555 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 PDCL2P2-201ENST00000533651 189 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC126177.3-201ENST00000551839 688 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 MIR3186-201ENST00000577404 85 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AL365400.2-201ENST00000605604 902 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC099676.1-201ENST00000608886 657 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC022149.2-201ENST00000621061 203 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AP003355.3-201ENST00000623465 114 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC095031.1-201ENST00000623685 672 ntBASIC3.58□□□□□ -1.84
VPS39Q96JC1 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS39Q96JC1 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS39Q96JC1 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS39Q96JC1 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS39Q96JC1 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS39Q96JC1 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS39Q96JC1 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS39Q96JC1 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 RNU6-207P-201ENST00000384137 107 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 SNORA57.1-201ENST00000391227 145 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 EI24P2-201ENST00000397776 1076 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 MIR1193-201ENST00000408109 78 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 SGO1P2-201ENST00000429458 1589 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 AL158071.1-201ENST00000430315 461 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC234064.1-201ENST00000436312 247 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 RPS29P7-201ENST00000439662 171 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC096751.1-202ENST00000502691 1067 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 ARL2BPP6-201ENST00000512757 439 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC026402.1-201ENST00000513642 170 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 MIR5685-201ENST00000579080 79 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 MIR4425-201ENST00000580572 84 ntBASIC3.57□□□□□ -1.84
VPS39Q96JC1 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS39Q96JC1 BNIP3P38-201ENST00000601117 544 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 156.1 ms