Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 Y_RNA.167-201ENST00000363735 109 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-1243P-201ENST00000364028 107 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 SNORA16A-201ENST00000384342 137 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC113618.1-201ENST00000416747 285 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC068533.1-201ENST00000418542 415 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 REREP1Y-201ENST00000422655 198 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 FABP5P14-201ENST00000437273 393 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 REREP2Y-201ENST00000439103 200 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 RPL32P28-201ENST00000443577 397 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC016696.1-201ENST00000446949 318 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC068305.1-201ENST00000497406 726 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 MTCYBP40-201ENST00000509390 1135 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 MYL12AP1-201ENST00000518490 515 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 HMGB1P41-201ENST00000520234 440 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC103843.2-201ENST00000530523 682 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL137161.1-201ENST00000532231 390 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 MIR3149-201ENST00000584629 83 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL139124.1-201ENST00000609123 421 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL031666.3-201ENST00000609320 1006 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL390240.1-201ENST00000612950 384 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL627230.1-201ENST00000613077 211 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL118522.2-201ENST00000616045 615 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 RNA5SP439-201ENST00000617595 124 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 RMST_9.1-201ENST00000619945 193 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AL353662.3-201ENST00000625131 237 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 AC091046.3-201ENST00000631455 1574 ntBASIC5.25□□□□□ -1.57
UBE3DQ7Z6J8 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 Y_RNA.31-201ENST00000362574 102 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-1188P-201ENST00000363795 107 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 Y_RNA.482-201ENST00000384377 111 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 MT-TG-201ENST00000387429 68 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-954P-201ENST00000411355 107 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 OR2AT2P-201ENST00000413438 905 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 SDHDP6-201ENST00000414693 480 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 RPL7P10-201ENST00000417407 739 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 MTCYBP9-201ENST00000431021 303 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AL359265.2-201ENST00000434367 631 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AL390119.1-201ENST00000440329 312 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AL118520.1-201ENST00000450770 291 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 RN7SL197P-201ENST00000466981 299 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 RN7SL188P-201ENST00000469842 285 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AC091912.1-201ENST00000511351 248 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AC017037.2-201ENST00000513850 890 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 MTCO2P24-201ENST00000515611 426 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-123P-201ENST00000516163 102 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AC027544.3-201ENST00000535082 757 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 MIR4790-201ENST00000577799 79 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 AP005403.1-201ENST00000579720 229 ntBASIC5.24□□□□□ -1.57
UBE3DQ7Z6J8 MIR1273E-201ENST00000581165 102 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 299.2 ms