Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL391417.1-201ENST00000404100 426 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC9P31274 AL513175.2-201ENST00000422071 443 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 XKRYP1-201ENST00000423438 492 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 XKRYP2-201ENST00000432915 492 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AL357552.1-201ENST00000445254 415 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXC9P31274 MRPL42P4-201ENST00000453267 443 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 RPL27AP5-201ENST00000469428 449 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC109925.1-201ENST00000478069 331 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC011825.1-201ENST00000484967 388 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 AC084024.2-201ENST00000503480 791 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC9P31274 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC9P31274 AC008494.2-201ENST00000514544 370 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC9P31274 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXC9P31274 LRRC34P1-201ENST00000542742 915 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 BPTFP1-201ENST00000579209 492 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC9P31274 AL020997.3-201ENST00000602843 359 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AL592148.2-201ENST00000612210 372 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AL138478.1-201ENST00000612252 832 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC090897.3-201ENST00000636973 1157 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC087821.2-201ENST00000637086 450 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HOXC9P31274 LINC02211-204ENST00000642024 1070 ntBASIC4.44□□□□□ -1.7
HOXC9P31274 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXC9P31274 AC006504.1-201ENST00000562493 3666 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
HOXC9P31274 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXC9P31274 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXC9P31274 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXC9P31274 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXC9P31274 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXC9P31274 MIR16-1-201ENST00000385271 89 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 RNU6-272P-201ENST00000411028 104 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 Z75741.2-201ENST00000417272 1167 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC073136.2-201ENST00000417282 849 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL353705.1-201ENST00000433468 480 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 RPS26P40-201ENST00000435209 294 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL357520.1-201ENST00000441557 453 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC073587.1-201ENST00000447093 876 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 PTENP1-201ENST00000447117 1215 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 AC233982.1-201ENST00000451247 436 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 RPL23AP44-201ENST00000482216 473 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 RPS27P23-201ENST00000487608 251 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 SMARCE1P4-201ENST00000523647 241 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXC9P31274 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXC9P31274 AL008729.2-201ENST00000606393 473 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXC9P31274 AC024257.5-201ENST00000612739 531 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC131238.1-201ENST00000617135 328 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 AC011330.2-201ENST00000621680 635 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 USP8P1-201ENST00000494673 3183 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 SGO1P1-201ENST00000603525 1447 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXC9P31274 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXC9P31274 SEPT7P7-201ENST00000420492 1301 ntBASIC4.43□□□□□ -1.7
HOXC9P31274 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXC9P31274 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXC9P31274 AC134882.1-201ENST00000603738 1676 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 SNORA51.12-201ENST00000384448 134 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 AL356320.2-201ENST00000417263 507 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 PAICSP7-201ENST00000419829 962 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 AL353678.1-201ENST00000422735 741 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 HMGB3P9-201ENST00000441799 583 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 AC004865.1-201ENST00000442276 1003 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXC9P31274 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXC9P31274 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 AC112673.1-201ENST00000513168 575 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 AC004024.1-201ENST00000549244 247 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 HIGD1AP1-201ENST00000550979 275 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 AC068446.3-201ENST00000555285 382 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXC9P31274 AC091488.1-201ENST00000604239 660 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 RNVU1-4-201ENST00000612985 164 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms