Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.63□□□□□ -1.83
PTPN4P29074 AL512506.2-201ENST00000624472 458 ntBASIC3.63□□□□□ -1.83
PTPN4P29074 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
PTPN4P29074 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PTPN4P29074 MTND4P9-201ENST00000507819 1346 ntBASIC3.63□□□□□ -1.83
PTPN4P29074 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.63□□□□□ -1.83
PTPN4P29074 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PTPN4P29074 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
PTPN4P29074 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 ANKRD36P1-201ENST00000344424 659 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RNU1-75P-201ENST00000347264 129 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RNA5SP295-201ENST00000362655 121 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RNA5SP387-201ENST00000364226 106 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RNU6-115P-201ENST00000364310 107 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 PTMAP5-201ENST00000393073 333 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 RPL31P1-201ENST00000398116 372 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 GSTA8P-201ENST00000404253 637 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 SNORA11.1-201ENST00000408133 129 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RPS3AP25-201ENST00000411660 793 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AC093578.1-201ENST00000415219 368 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.62□□□□□ -1.83
PTPN4P29074 AL034418.1-201ENST00000448675 860 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RPL7P49-201ENST00000471402 708 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RPL7P47-201ENST00000497299 556 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC048346.1-201ENST00000510247 144 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 RNU6-1073P-201ENST00000517182 106 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 AC109635.4-202ENST00000531666 412 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.62□□□□□ -1.83
PTPN4P29074 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 LSM6P2-201ENST00000552208 177 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC006960.3-201ENST00000561845 705 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.62□□□□□ -1.83
PTPN4P29074 MIR5047-201ENST00000579212 100 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 MIR5187-201ENST00000583479 76 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AL354760.1-201ENST00000608357 643 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC084757.4-201ENST00000616350 526 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC079684.1-201ENST00000621405 437 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 AL391262.2-201ENST00000622466 494 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
PTPN4P29074 AL513302.2-201ENST00000562313 1842 ntBASIC3.62□□□□□ -1.83
PTPN4P29074 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTPN4P29074 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.62□□□□□ -1.83
PTPN4P29074 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PTPN4P29074 AL359893.1-201ENST00000447628 1580 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
PTPN4P29074 RNU6-374P-201ENST00000364146 108 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 RNA5SP42-201ENST00000364278 115 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 OR1L1-202ENST00000373686 1083 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 RNU6-1226P-201ENST00000384317 107 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 RNU6-441P-201ENST00000384545 106 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 RNU6-1000P-201ENST00000391066 106 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.61□□□□□ -1.83
PTPN4P29074 AL035423.1-201ENST00000420331 213 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 OFD1P18Y-201ENST00000420889 959 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PTPN4P29074 RPS3AP46-201ENST00000448352 682 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AC099563.1-201ENST00000456086 418 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 RPS4XP2-201ENST00000458402 793 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 MTCO3P35-201ENST00000485582 781 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 RPL23AP55-201ENST00000498163 452 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.61□□□□□ -1.83
PTPN4P29074 AC008837.1-201ENST00000511513 412 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.61□□□□□ -1.83
PTPN4P29074 MTCO2P32-201ENST00000514865 403 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.61□□□□□ -1.83
PTPN4P29074 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms