Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL354976.1-201ENST00000613843 387 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 AL157817.1-201ENST00000614264 790 ntBASIC2.41□□□□□ -2.02
HLA-DMBP28068 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
HLA-DMBP28068 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HLA-DMBP28068 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
HLA-DMBP28068 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
HLA-DMBP28068 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
HLA-DMBP28068 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 METTL21EP-201ENST00000298105 713 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 RNU2-71P-201ENST00000411395 189 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 AL512504.1-201ENST00000415494 778 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC245054.2-201ENST00000415639 319 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 MTCYBP24-201ENST00000420387 1106 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 RPL21P2-201ENST00000440049 481 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 HMGB3P6-201ENST00000444896 598 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC069540.1-201ENST00000446320 988 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AL590639.1-201ENST00000456484 337 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 BTF3P5-201ENST00000457252 467 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 RPL21P104-201ENST00000464143 478 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 ST13P14-201ENST00000474095 734 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC017015.1-201ENST00000477387 286 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 HMGB1P22-201ENST00000505315 124 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 SNORA74D-201ENST00000516404 141 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 RN7SKP283-201ENST00000517197 270 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 AL157394.1-201ENST00000562983 1224 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 MIR2682-201ENST00000580305 110 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 YWHAQP7-201ENST00000603536 658 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 uc_338.25-201ENST00000613756 156 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC009464.1-201ENST00000615731 469 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 MIR3651-201ENST00000630427 90 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
HLA-DMBP28068 MTND5P19-201ENST00000424872 1794 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HLA-DMBP28068 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.4□□□□□ -2.03
HLA-DMBP28068 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 ZNF37BP-203ENST00000452306 1352 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 AP001350.1-201ENST00000601906 1524 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL353743.1-202ENST00000431724 1695 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 SNORA26.7-201ENST00000391288 122 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 PRRC2CP1-201ENST00000404428 159 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL354719.1-201ENST00000406535 843 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC008280.1-201ENST00000418851 412 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
HLA-DMBP28068 YWHAZP7-201ENST00000436906 631 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 RAD1P2-201ENST00000446414 663 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 RN7SL75P-201ENST00000461926 281 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 RN7SKP57-201ENST00000517248 293 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AP001207.1-201ENST00000524051 481 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 MIR3200-201ENST00000580767 85 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC006116.7-201ENST00000590141 756 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 AL606834.2-201ENST00000602954 668 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 OR2BH1P-201ENST00000608850 864 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 AC131902.3-201ENST00000611767 581 ntBASIC2.39□□□□□ -2.03
HLA-DMBP28068 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
HLA-DMBP28068 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HLA-DMBP28068 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.39□□□□□ -2.03
HLA-DMBP28068 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
HLA-DMBP28068 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
HLA-DMBP28068 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms