Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MTCYBP3-201ENST00000445588 1137 ntBASIC3.86□□□□□ -1.79
MSH3P20585 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.86□□□□□ -1.79
MSH3P20585 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH3P20585 RN7SKP82-201ENST00000516786 223 ntBASIC3.86□□□□□ -1.79
MSH3P20585 RNA5SP143-201ENST00000516936 115 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH3P20585 IGKV2D-23-201ENST00000518179 286 ntBASIC3.86□□□□□ -1.79
MSH3P20585 NARSP2-201ENST00000518524 679 ntBASIC3.86□□□□□ -1.79
MSH3P20585 SOD1P3-201ENST00000518682 454 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC087369.1-201ENST00000520775 996 ntBASIC3.86□□□□□ -1.79
MSH3P20585 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH3P20585 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.86□□□□□ -1.79
MSH3P20585 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH3P20585 MTCYBP27-201ENST00000555160 670 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC090888.1-201ENST00000561335 1141 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC135628.1-201ENST00000568867 534 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC138915.2-201ENST00000569776 97 ntBASIC3.86□□□□□ -1.79
MSH3P20585 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.86□□□□□ -1.79
MSH3P20585 AC103881.1-201ENST00000603476 538 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC024941.1-201ENST00000612250 334 ntBASIC3.86□□□□□ -1.79
MSH3P20585 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 AC004777.1-201ENST00000624317 287 ntBASIC3.86□□□□□ -1.79
MSH3P20585 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 AC026634.1-201ENST00000634369 198 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
MSH3P20585 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
MSH3P20585 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
MSH3P20585 RNU6-251P-201ENST00000363235 104 ntBASIC3.85□□□□□ -1.79
MSH3P20585 RNU6-931P-201ENST00000363850 107 ntBASIC3.85□□□□□ -1.79
MSH3P20585 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.85□□□□□ -1.79
MSH3P20585 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
MSH3P20585 RNU6-213P-201ENST00000384051 104 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AL590084.2-201ENST00000401481 382 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AL138878.1-201ENST00000405131 347 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC068533.2-201ENST00000411872 306 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.85□□□□□ -1.79
MSH3P20585 AC008280.1-201ENST00000418851 412 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 AL354941.1-201ENST00000438600 464 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.85□□□□□ -1.79
MSH3P20585 NDUFA5P7-201ENST00000452914 242 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.85□□□□□ -1.79
MSH3P20585 OR9M1P-201ENST00000459641 921 ntBASIC3.85□□□□□ -1.79
MSH3P20585 MTND1P16-201ENST00000465177 898 ntBASIC3.85□□□□□ -1.79
MSH3P20585 LINC00888-204ENST00000487386 421 ntBASIC3.85□□□□□ -1.79
MSH3P20585 RPL7P24-201ENST00000493052 752 ntBASIC3.85□□□□□ -1.79
MSH3P20585 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.85□□□□□ -1.79
MSH3P20585 AC068305.1-201ENST00000497406 726 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC090071.1-201ENST00000507713 644 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.85□□□□□ -1.79
MSH3P20585 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 MTND1P22-201ENST00000510572 951 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC005798.1-201ENST00000513715 387 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.85□□□□□ -1.79
MSH3P20585 SNORA48.10-201ENST00000516965 160 ntBASIC3.85□□□□□ -1.79
MSH3P20585 RNU6-1261P-201ENST00000517194 104 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.85□□□□□ -1.79
MSH3P20585 AC084824.1-201ENST00000550917 1005 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC141257.3-201ENST00000572906 215 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.85□□□□□ -1.79
MSH3P20585 AC022069.1-201ENST00000582910 658 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC022916.3-201ENST00000592961 742 ntBASIC3.85□□□□□ -1.79
MSH3P20585 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 AC121247.2-201ENST00000604776 136 ntBASIC3.85□□□□□ -1.79
MSH3P20585 AC073530.2-201ENST00000623987 261 ntBASIC3.85□□□□□ -1.79
MSH3P20585 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 AP003399.1-201ENST00000637534 361 ntBASIC3.85□□□□□ -1.79
MSH3P20585 OR8B1P-202ENST00000641132 1178 ntBASIC3.85□□□□□ -1.79
MSH3P20585 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
MSH3P20585 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSH3P20585 MTCO1P14-201ENST00000441695 1559 ntBASIC3.85□□□□□ -1.79
MSH3P20585 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSH3P20585 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSH3P20585 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSH3P20585 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
MSH3P20585 NCAPGP1-201ENST00000505112 1814 ntBASIC3.84□□□□□ -1.79
MSH3P20585 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSH3P20585 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.84□□□□□ -1.79
MSH3P20585 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms