Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-374P-201ENST00000364146 108 ntBASIC3.3□□□□□ -1.88
SDC1P18827 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SDC1P18827 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 RAB28P1-201ENST00000411517 641 ntBASIC3.3□□□□□ -1.88
SDC1P18827 OR4K6P-201ENST00000416478 897 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.3□□□□□ -1.88
SDC1P18827 AL513174.1-201ENST00000423182 629 ntBASIC3.3□□□□□ -1.88
SDC1P18827 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC1P18827 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 RPL23AP82-202ENST00000427528 469 ntBASIC3.3□□□□□ -1.88
SDC1P18827 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 KCTD10P1-201ENST00000434203 625 ntBASIC3.3□□□□□ -1.88
SDC1P18827 BX679664.1-201ENST00000434429 253 ntBASIC3.3□□□□□ -1.88
SDC1P18827 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC1P18827 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 GTF2IP7-202ENST00000436677 309 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AC092393.1-201ENST00000439625 742 ntBASIC3.3□□□□□ -1.88
SDC1P18827 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SDC1P18827 AC112492.1-201ENST00000449607 712 ntBASIC3.3□□□□□ -1.88
SDC1P18827 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 CENPBD1P1-201ENST00000464061 469 ntBASIC3.3□□□□□ -1.88
SDC1P18827 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 AL136126.1-201ENST00000473603 402 ntBASIC3.3□□□□□ -1.88
SDC1P18827 VPS26AP1-201ENST00000483197 979 ntBASIC3.3□□□□□ -1.88
SDC1P18827 UBE2V1P12-201ENST00000503954 474 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 AP001636.2-201ENST00000525517 696 ntBASIC3.3□□□□□ -1.88
SDC1P18827 OR4A45P-201ENST00000529954 901 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 GTF2IP22-201ENST00000554443 182 ntBASIC3.3□□□□□ -1.88
SDC1P18827 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.3□□□□□ -1.88
SDC1P18827 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 AC006116.10-201ENST00000591836 581 ntBASIC3.3□□□□□ -1.88
SDC1P18827 VN1R83P-201ENST00000595685 445 ntBASIC3.3□□□□□ -1.88
SDC1P18827 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 VN1R85P-201ENST00000601587 426 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AC119501.1-201ENST00000603646 475 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AL160237.3-201ENST00000604114 1013 ntBASIC3.3□□□□□ -1.88
SDC1P18827 HMGN2P28-201ENST00000606102 262 ntBASIC3.3□□□□□ -1.88
SDC1P18827 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.3□□□□□ -1.88
SDC1P18827 AC092628.2-201ENST00000622492 339 ntBASIC3.3□□□□□ -1.88
SDC1P18827 AC026634.1-201ENST00000634369 198 ntBASIC3.3□□□□□ -1.88
SDC1P18827 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SDC1P18827 MTND5P3-201ENST00000438536 1800 ntBASIC3.3□□□□□ -1.88
SDC1P18827 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
SDC1P18827 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SDC1P18827 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC1P18827 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SDC1P18827 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SDC1P18827 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC1P18827 RNU6-1066P-201ENST00000363573 105 ntBASIC3.29□□□□□ -1.88
SDC1P18827 snoZ40.1-201ENST00000364540 72 ntBASIC3.29□□□□□ -1.88
SDC1P18827 SNORD6-201ENST00000365444 73 ntBASIC3.29□□□□□ -1.88
SDC1P18827 SUGT1P1-201ENST00000379514 476 ntBASIC3.29□□□□□ -1.88
SDC1P18827 SNORA40.2-201ENST00000390847 128 ntBASIC3.29□□□□□ -1.88
SDC1P18827 RNU6-1300P-201ENST00000391046 108 ntBASIC3.29□□□□□ -1.88
SDC1P18827 RPL21P17-201ENST00000397467 475 ntBASIC3.29□□□□□ -1.88
SDC1P18827 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC1P18827 LUZP4P1-201ENST00000415420 344 ntBASIC3.29□□□□□ -1.88
SDC1P18827 MTND2P16-201ENST00000419987 799 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC1P18827 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC1P18827 RPF2P1-201ENST00000424137 906 ntBASIC3.29□□□□□ -1.88
SDC1P18827 DPRXP1-201ENST00000426312 460 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC091390.1-201ENST00000433904 331 ntBASIC3.29□□□□□ -1.88
SDC1P18827 SEPT7P5-201ENST00000434048 306 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC241584.1-201ENST00000438469 1241 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC004854.1-201ENST00000440356 349 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.29□□□□□ -1.88
SDC1P18827 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SDC1P18827 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC1P18827 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC1P18827 SNORD105B-201ENST00000458770 79 ntBASIC3.29□□□□□ -1.88
SDC1P18827 U3.44-201ENST00000458938 192 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AL049830.2-201ENST00000480072 201 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC107934.2-201ENST00000518653 310 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC1P18827 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.29□□□□□ -1.88
SDC1P18827 MED28P5-201ENST00000528254 438 ntBASIC3.29□□□□□ -1.88
SDC1P18827 MTND3P13-201ENST00000574391 343 ntBASIC3.29□□□□□ -1.88
SDC1P18827 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC1P18827 AC022146.1-201ENST00000595307 847 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC010591.1-201ENST00000603941 649 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AL009028.1-201ENST00000604895 802 ntBASIC3.29□□□□□ -1.88
SDC1P18827 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.29□□□□□ -1.88
SDC1P18827 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
SDC1P18827 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SDC1P18827 AC026951.1-201ENST00000559530 2459 ntBASIC3.29□□□□□ -1.88
SDC1P18827 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms