Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC005242.1-201ENST00000585658 438 ntBASIC3.84□□□□□ -1.8
COL2A1P02458 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.84□□□□□ -1.8
COL2A1P02458 AC004987.4-201ENST00000603383 338 ntBASIC3.84□□□□□ -1.8
COL2A1P02458 AC025588.2-201ENST00000604851 466 ntBASIC3.84□□□□□ -1.8
COL2A1P02458 HULC.1-201ENST00000612720 240 ntBASIC3.84□□□□□ -1.8
COL2A1P02458 AC008759.3-201ENST00000613300 508 ntBASIC3.84□□□□□ -1.8
COL2A1P02458 AL590410.1-201ENST00000617925 333 ntBASIC3.84□□□□□ -1.8
COL2A1P02458 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL2A1P02458 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL2A1P02458 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL2A1P02458 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL2A1P02458 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
COL2A1P02458 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 LINC01355-201ENST00000566551 5444 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.83□□□□□ -1.8
COL2A1P02458 RNU4-28P-201ENST00000364739 141 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 Y_RNA.505-201ENST00000384489 102 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 SNORD116-4-201ENST00000384733 96 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 AL355615.1-201ENST00000406187 641 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL2A1P02458 AC022028.1-201ENST00000412054 408 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 RPS24P7-201ENST00000416921 246 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.83□□□□□ -1.8
COL2A1P02458 RPL32P28-201ENST00000443577 397 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.83□□□□□ -1.8
COL2A1P02458 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL2A1P02458 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 USP9YP25-201ENST00000457708 443 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 CCDC75P1-201ENST00000469247 791 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 AC087312.1-201ENST00000471411 480 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL2A1P02458 AC134050.1-201ENST00000495088 933 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL2A1P02458 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC138409.2-202ENST00000507274 458 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL2A1P02458 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 CYB5AP5-201ENST00000549779 389 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 AL157394.1-201ENST00000562983 1224 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.83□□□□□ -1.8
COL2A1P02458 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.83□□□□□ -1.8
COL2A1P02458 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.83□□□□□ -1.8
COL2A1P02458 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL2A1P02458 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL2A1P02458 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL2A1P02458 SNORA5B-201ENST00000363786 132 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 RNU4-75P-201ENST00000364621 146 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 RNU6-7-201ENST00000364784 107 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 RNU6-8-201ENST00000365467 107 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL2A1P02458 RNU6-354P-201ENST00000383862 107 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 RNU6-481P-201ENST00000384194 107 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 RNU6-610P-201ENST00000384264 107 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL2A1P02458 RNA5SP296-201ENST00000410523 111 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 USP9YP26-201ENST00000421008 661 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AL035407.1-201ENST00000429211 571 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 TRBV8-2-201ENST00000475637 270 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC126121.1-201ENST00000482313 553 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 OR9N1P-202ENST00000494289 481 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC093752.1-206ENST00000511823 336 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC021733.2-201ENST00000518830 497 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 PSMA2P1-201ENST00000526365 646 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.82□□□□□ -1.8
COL2A1P02458 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL2A1P02458 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.82□□□□□ -1.8
COL2A1P02458 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC009094.1-201ENST00000564443 426 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC104763.2-201ENST00000604179 382 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC099785.1-201ENST00000605697 437 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC004775.1-201ENST00000607389 753 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC105227.2-201ENST00000615075 605 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 uc_338.32-201ENST00000615087 172 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 AC025016.1-201ENST00000616746 682 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.82□□□□□ -1.8
COL2A1P02458 AC068722.2-201ENST00000618734 544 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.82□□□□□ -1.8
COL2A1P02458 ZNF876P-202ENST00000398732 1485 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.82□□□□□ -1.8
COL2A1P02458 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.82□□□□□ -1.8
COL2A1P02458 PROS2P-201ENST00000474651 1951 ntBASIC3.82□□□□□ -1.8
COL2A1P02458 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.82□□□□□ -1.8
COL2A1P02458 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms