Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU4-35P-201ENST00000362588 141 ntBASIC3.53□□□□□ -1.84
SDC3O75056 RNVU1-3-201ENST00000364313 161 ntBASIC3.53□□□□□ -1.84
SDC3O75056 SNORD6-201ENST00000365444 73 ntBASIC3.53□□□□□ -1.84
SDC3O75056 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SDC3O75056 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
SDC3O75056 Y_RNA.493-201ENST00000384422 102 ntBASIC3.53□□□□□ -1.84
SDC3O75056 RNU6-328P-201ENST00000390887 106 ntBASIC3.53□□□□□ -1.84
SDC3O75056 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC3O75056 GSTA8P-201ENST00000404253 637 ntBASIC3.53□□□□□ -1.84
SDC3O75056 MTCO3P31-201ENST00000405526 789 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AL138880.1-201ENST00000405824 642 ntBASIC3.53□□□□□ -1.84
SDC3O75056 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
SDC3O75056 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 HMGB3P20-201ENST00000417997 600 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 MTND2P16-201ENST00000419987 799 ntBASIC3.53□□□□□ -1.84
SDC3O75056 PTP4A1P5-201ENST00000420305 455 ntBASIC3.53□□□□□ -1.84
SDC3O75056 HIGD1AP12-201ENST00000427832 281 ntBASIC3.53□□□□□ -1.84
SDC3O75056 ATP5JP1-201ENST00000431631 322 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AC011242.1-201ENST00000433596 1158 ntBASIC3.53□□□□□ -1.84
SDC3O75056 PTGES3P1-201ENST00000439531 483 ntBASIC3.53□□□□□ -1.84
SDC3O75056 CYCSP32-201ENST00000440548 321 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 RNF2P1-201ENST00000442955 1010 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.53□□□□□ -1.84
SDC3O75056 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.53□□□□□ -1.84
SDC3O75056 RPL32P34-201ENST00000486380 400 ntBASIC3.53□□□□□ -1.84
SDC3O75056 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 AC008837.1-201ENST00000511513 412 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AC109471.1-201ENST00000511631 612 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AC008802.1-201ENST00000519121 791 ntBASIC3.53□□□□□ -1.84
SDC3O75056 MTCYBP41-201ENST00000528913 1123 ntBASIC3.53□□□□□ -1.84
SDC3O75056 OR4A45P-201ENST00000529954 901 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AC011611.1-201ENST00000552179 197 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC3O75056 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.53□□□□□ -1.84
SDC3O75056 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC3O75056 ZNF415P1-201ENST00000582279 1166 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AC025588.3-201ENST00000604182 274 ntBASIC3.53□□□□□ -1.84
SDC3O75056 AL513477.2-201ENST00000607858 568 ntBASIC3.53□□□□□ -1.84
SDC3O75056 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
SDC3O75056 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.53□□□□□ -1.84
SDC3O75056 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC3O75056 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC3O75056 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC3O75056 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SDC3O75056 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC3O75056 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SDC3O75056 RNU6-263P-201ENST00000363811 107 ntBASIC3.52□□□□□ -1.85
SDC3O75056 SNORA7.2-201ENST00000364446 145 ntBASIC3.52□□□□□ -1.85
SDC3O75056 RNU6-335P-201ENST00000364563 113 ntBASIC3.52□□□□□ -1.85
SDC3O75056 MIR649-201ENST00000384843 97 ntBASIC3.52□□□□□ -1.85
SDC3O75056 MIR607-201ENST00000385241 96 ntBASIC3.52□□□□□ -1.85
SDC3O75056 TMSB4XP8-201ENST00000402089 135 ntBASIC3.52□□□□□ -1.85
SDC3O75056 RNU4-78P-201ENST00000410940 126 ntBASIC3.52□□□□□ -1.85
SDC3O75056 TMSB4XP6-201ENST00000415187 135 ntBASIC3.52□□□□□ -1.85
SDC3O75056 HSFY4P-201ENST00000415994 1181 ntBASIC3.52□□□□□ -1.85
SDC3O75056 TMSB4XP1-201ENST00000424567 135 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 B3GNT2P1-201ENST00000434960 952 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC3O75056 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 HMGN2P7-201ENST00000456186 273 ntBASIC3.52□□□□□ -1.85
SDC3O75056 NF1P3-201ENST00000457709 450 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC3O75056 AP000563.1-201ENST00000490865 758 ntBASIC3.52□□□□□ -1.85
SDC3O75056 SUMO2P5-201ENST00000506790 245 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 AC026784.1-201ENST00000507986 352 ntBASIC3.52□□□□□ -1.85
SDC3O75056 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.52□□□□□ -1.85
SDC3O75056 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC3O75056 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 RNA5SP135-201ENST00000517019 125 ntBASIC3.52□□□□□ -1.85
SDC3O75056 snoZ278.1-201ENST00000517059 112 ntBASIC3.52□□□□□ -1.85
SDC3O75056 RNU6-1028P-201ENST00000517164 93 ntBASIC3.52□□□□□ -1.85
SDC3O75056 RN7SKP57-201ENST00000517248 293 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 SUMO2P20-201ENST00000520803 283 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC010376.1-201ENST00000522101 334 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC3O75056 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC3O75056 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC3O75056 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.52□□□□□ -1.85
SDC3O75056 MIR5186-201ENST00000577504 120 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC3O75056 AP001542.2-201ENST00000593141 364 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC068722.2-201ENST00000618734 544 ntBASIC3.52□□□□□ -1.85
SDC3O75056 AC069209.1-201ENST00000619282 651 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms