Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RPS17P11-201ENST00000474297 293 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.13□□□□□ -1.91
SHOX2O60902 MTND4LP22-201ENST00000508209 276 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.13□□□□□ -1.91
SHOX2O60902 RN7SKP282-201ENST00000516824 299 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC026403.1-201ENST00000518938 295 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 RPL12P22-201ENST00000519073 490 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC004923.2-201ENST00000529649 369 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.13□□□□□ -1.91
SHOX2O60902 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.13□□□□□ -1.91
SHOX2O60902 AC010735.1-201ENST00000567305 1026 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC006504.3-201ENST00000586818 523 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
SHOX2O60902 AC015802.5-201ENST00000607478 399 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 AC092184.1-201ENST00000625042 715 ntBASIC3.13□□□□□ -1.91
SHOX2O60902 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.13□□□□□ -1.91
SHOX2O60902 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SHOX2O60902 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.13□□□□□ -1.91
SHOX2O60902 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SHOX2O60902 API5P2-201ENST00000397055 1498 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 SAGE4P-201ENST00000442271 3381 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 SNORA7.2-201ENST00000364446 145 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 RNU6-301P-201ENST00000384277 107 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 RPL21P17-201ENST00000397467 475 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL355379.1-201ENST00000405542 640 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC010385.1-201ENST00000412374 256 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.12□□□□□ -1.91
SHOX2O60902 USP9YP36-201ENST00000424581 829 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL035458.1-201ENST00000433096 585 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 RPL21P112-201ENST00000434403 463 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.12□□□□□ -1.91
SHOX2O60902 AL592437.1-201ENST00000443781 492 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL590399.6-201ENST00000446396 307 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 RPL7P59-201ENST00000447700 943 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 MTND3P6-201ENST00000485242 339 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL358832.1-201ENST00000497800 389 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC091917.2-201ENST00000505002 744 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC104619.4-201ENST00000510773 249 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC074250.1-201ENST00000511117 192 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.12□□□□□ -1.91
SHOX2O60902 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.12□□□□□ -1.91
SHOX2O60902 RNU6-237P-201ENST00000515985 71 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.12□□□□□ -1.91
SHOX2O60902 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.12□□□□□ -1.91
SHOX2O60902 MTND2P26-201ENST00000528255 1029 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.12□□□□□ -1.91
SHOX2O60902 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.12□□□□□ -1.91
SHOX2O60902 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHOX2O60902 ADAM3B-201ENST00000569937 840 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 NTAN1P1-201ENST00000603150 646 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC242628.1-201ENST00000606810 391 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL359198.2-201ENST00000611836 194 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AL359535.1-201ENST00000612100 1087 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 AC005156.1-201ENST00000613371 573 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 uc_338.25-201ENST00000613756 156 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 Z99129.2-201ENST00000619967 314 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 PLCE1P1-201ENST00000622094 305 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 AC007256.1-201ENST00000392253 2765 ntBASIC3.12□□□□□ -1.91
SHOX2O60902 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHOX2O60902 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
SHOX2O60902 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.12□□□□□ -1.91
SHOX2O60902 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHOX2O60902 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHOX2O60902 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SHOX2O60902 RNU6-1293P-201ENST00000384077 107 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 Y_RNA.510-201ENST00000384511 114 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.11□□□□□ -1.91
SHOX2O60902 Z86062.1-201ENST00000406773 777 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 XKRYP4-201ENST00000414395 483 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.11□□□□□ -1.91
SHOX2O60902 MTCO3P4-201ENST00000419236 787 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 MTND2P16-201ENST00000419987 799 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.11□□□□□ -1.91
SHOX2O60902 CYCSP4-201ENST00000429682 331 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 RPL36AP6-201ENST00000435770 321 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.11□□□□□ -1.91
SHOX2O60902 XKRYP5-201ENST00000449659 483 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AP001486.1-201ENST00000463339 476 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 RPL5P24-201ENST00000463742 885 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 ACTR3P3-201ENST00000480448 893 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 RPS4XP13-201ENST00000483219 789 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.11□□□□□ -1.91
SHOX2O60902 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.11□□□□□ -1.91
SHOX2O60902 HMGB1P46-201ENST00000520062 610 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 MIR2682-201ENST00000580305 110 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.11□□□□□ -1.91
SHOX2O60902 AC092354.2-201ENST00000607786 514 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AC107294.1-201ENST00000609524 467 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AL121772.2-201ENST00000614331 297 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 RNU6-156P-201ENST00000621869 107 ntBASIC3.11□□□□□ -1.91
SHOX2O60902 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.11□□□□□ -1.91
SHOX2O60902 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms