Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTND2P18-201ENST00000419962 1030 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 USP9YP35-201ENST00000435696 412 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL445567.1-201ENST00000439121 144 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL591503.2-201ENST00000442314 1005 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 OR6K5P-201ENST00000447050 945 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 TRBV26-201ENST00000456572 344 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 PABPC1P3-201ENST00000469174 459 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC022034.3-201ENST00000471393 478 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 UQCRHP4-201ENST00000471686 272 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC103987.1-201ENST00000473394 348 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC041039.1-201ENST00000485656 536 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 RPL35P6-201ENST00000490024 372 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC108078.3-201ENST00000502633 489 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC108941.1-201ENST00000502853 530 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 XKRY-201ENST00000510392 1100 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 MRPL49P2-201ENST00000521066 465 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC087373.1-201ENST00000524920 491 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 UBE2NP1-201ENST00000545592 458 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC008127.2-201ENST00000549925 1075 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AP001180.3-201ENST00000582221 145 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 MIR3138-201ENST00000585238 82 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 OR4G1P-201ENST00000588632 938 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC083899.3-201ENST00000603413 594 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL161729.3-201ENST00000603533 673 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC104662.1-201ENST00000604448 511 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC124312.4-201ENST00000605533 310 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC243773.3-201ENST00000613270 256 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AP005264.7-201ENST00000625003 745 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC007671.2-201ENST00000637344 619 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 ZNF37BP-203ENST00000452306 1352 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 MIR383-201ENST00000362257 73 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 MIR3074-201ENST00000384885 81 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 RPS12P23-201ENST00000419579 400 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 RPL17P36-201ENST00000420302 549 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL022400.1-201ENST00000423946 935 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 RPL23AP46-201ENST00000438548 490 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 RPS4XP4-201ENST00000443195 763 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 MTATP6P26-201ENST00000445926 662 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 MTCYBP11-201ENST00000447254 1109 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 RPL26P28-201ENST00000451325 435 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 PLGLA-201ENST00000465668 449 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 FTH1P2-201ENST00000466086 412 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 BET1P1-201ENST00000482276 359 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 LINC00888-204ENST00000487386 421 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 RNF138P1-201ENST00000502765 546 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 TMEM251P1-201ENST00000503717 318 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 LTV1P1-201ENST00000510683 1237 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms