Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 MTCO3P43-201ENST00000440974 771 ntBASIC3.33□□□□□ -1.88
SHHQ15465 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.33□□□□□ -1.88
SHHQ15465 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 MTND2P8-201ENST00000450555 1025 ntBASIC3.33□□□□□ -1.88
SHHQ15465 RPS20P32-201ENST00000456044 356 ntBASIC3.33□□□□□ -1.88
SHHQ15465 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.33□□□□□ -1.88
SHHQ15465 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.33□□□□□ -1.88
SHHQ15465 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 RPS3AP50-201ENST00000487064 803 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.33□□□□□ -1.88
SHHQ15465 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.33□□□□□ -1.88
SHHQ15465 FABP5P6-201ENST00000510588 409 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.33□□□□□ -1.88
SHHQ15465 SCGB1D5P-201ENST00000515134 247 ntBASIC3.33□□□□□ -1.88
SHHQ15465 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHHQ15465 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.33□□□□□ -1.88
SHHQ15465 OR4U1P-201ENST00000554958 912 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AC090079.2-201ENST00000575289 768 ntBASIC3.33□□□□□ -1.88
SHHQ15465 MIR548Y-201ENST00000582739 110 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.33□□□□□ -1.88
SHHQ15465 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SHHQ15465 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.33□□□□□ -1.88
SHHQ15465 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHHQ15465 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHHQ15465 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SHHQ15465 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHHQ15465 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHHQ15465 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHHQ15465 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.32□□□□□ -1.88
SHHQ15465 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.32□□□□□ -1.88
SHHQ15465 MIR504-201ENST00000385065 83 ntBASIC3.32□□□□□ -1.88
SHHQ15465 HMGB3P18-201ENST00000406327 590 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC003685.2-201ENST00000422795 395 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.32□□□□□ -1.88
SHHQ15465 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.32□□□□□ -1.88
SHHQ15465 AC245517.2-201ENST00000442890 346 ntBASIC3.32□□□□□ -1.88
SHHQ15465 MTCO3P20-201ENST00000454926 688 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.32□□□□□ -1.88
SHHQ15465 AC010307.1-201ENST00000467206 836 ntBASIC3.32□□□□□ -1.88
SHHQ15465 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.32□□□□□ -1.88
SHHQ15465 AC083906.5-201ENST00000503722 328 ntBASIC3.32□□□□□ -1.88
SHHQ15465 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.32□□□□□ -1.88
SHHQ15465 SETP12-201ENST00000514068 805 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.32□□□□□ -1.88
SHHQ15465 AC010306.1-201ENST00000523223 1117 ntBASIC3.32□□□□□ -1.88
SHHQ15465 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SHHQ15465 PDCL2P2-201ENST00000533651 189 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.32□□□□□ -1.88
SHHQ15465 MIR3186-201ENST00000577404 85 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AP001180.3-201ENST00000582221 145 ntBASIC3.32□□□□□ -1.88
SHHQ15465 VN1R78P-201ENST00000597393 564 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.32□□□□□ -1.88
SHHQ15465 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.32□□□□□ -1.88
SHHQ15465 AC012531.5-201ENST00000611375 151 ntBASIC3.32□□□□□ -1.88
SHHQ15465 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC253576.2-201ENST00000618815 580 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.32□□□□□ -1.88
SHHQ15465 AC015726.3-201ENST00000624501 418 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AL356094.1-201ENST00000624663 1212 ntBASIC3.32□□□□□ -1.88
SHHQ15465 AC243829.7-201ENST00000633081 225 ntBASIC3.32□□□□□ -1.88
SHHQ15465 DCAF13P3-201ENST00000561147 1334 ntBASIC3.32□□□□□ -1.88
SHHQ15465 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHHQ15465 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHHQ15465 AL353743.4-201ENST00000422653 1547 ntBASIC3.32□□□□□ -1.88
SHHQ15465 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
SHHQ15465 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.32□□□□□ -1.88
SHHQ15465 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
SHHQ15465 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.32□□□□□ -1.88
SHHQ15465 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.32□□□□□ -1.88
SHHQ15465 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHHQ15465 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHHQ15465 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
SHHQ15465 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHHQ15465 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.31□□□□□ -1.88
SHHQ15465 RNU6-317P-201ENST00000384031 107 ntBASIC3.31□□□□□ -1.88
SHHQ15465 RNU2-52P-201ENST00000410680 190 ntBASIC3.31□□□□□ -1.88
SHHQ15465 RPL30P2-201ENST00000414021 291 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AL357078.2-201ENST00000416486 427 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AL513477.1-202ENST00000417061 214 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AL645937.1-202ENST00000421799 937 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.31□□□□□ -1.88
SHHQ15465 CEACAMP4-201ENST00000457676 421 ntBASIC3.31□□□□□ -1.88
SHHQ15465 snoU13.26-201ENST00000459452 105 ntBASIC3.31□□□□□ -1.88
SHHQ15465 RPL9P32-201ENST00000464118 620 ntBASIC3.31□□□□□ -1.88
SHHQ15465 RN7SL330P-201ENST00000469709 307 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC114967.1-201ENST00000504890 259 ntBASIC3.31□□□□□ -1.88
SHHQ15465 BTF3L4P4-201ENST00000506381 449 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC111000.2-201ENST00000507775 550 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC008413.1-201ENST00000511864 177 ntBASIC3.31□□□□□ -1.88
SHHQ15465 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.31□□□□□ -1.88
SHHQ15465 AC107934.2-201ENST00000518653 310 ntBASIC3.31□□□□□ -1.88
SHHQ15465 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.31□□□□□ -1.88
SHHQ15465 MTND1P36-201ENST00000522384 936 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC019227.1-201ENST00000526902 510 ntBASIC3.31□□□□□ -1.88
SHHQ15465 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms