Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EIF2S2P3-201ENST00000428356 999 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC004975.1-201ENST00000428733 208 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.2□□□□□ -2.06
FOXA3P55318 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC005189.1-201ENST00000431286 310 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 RPL36AP6-201ENST00000435770 321 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 SNRPEP4-201ENST00000435815 279 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA3P55318 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
FOXA3P55318 AC017015.1-201ENST00000477387 286 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC103975.1-201ENST00000482506 483 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC019227.1-201ENST00000526902 510 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 OR4A45P-201ENST00000529954 901 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 DNAJC8P1-201ENST00000554535 372 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AL355836.1-201ENST00000555951 870 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC012182.1-201ENST00000570133 895 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC067959.1-201ENST00000604334 379 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 IGHV3-29-201ENST00000604817 344 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC008962.1-201ENST00000605729 304 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC105227.2-201ENST00000615075 605 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 RNU6-156P-201ENST00000621869 107 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 AC006963.1-201ENST00000624003 1052 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC139713.2-210ENST00000641741 992 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 PABPC1P7-201ENST00000413177 1513 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
FOXA3P55318 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 ZNF37BP-203ENST00000452306 1352 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
FOXA3P55318 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 AL161912.2-201ENST00000565707 3007 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXA3P55318 VTRNA1-1-201ENST00000363120 99 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 OR6K3-202ENST00000368146 996 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC234772.1-201ENST00000377927 937 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 MIR592-201ENST00000384959 97 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 BTBD10P2-201ENST00000404779 676 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AL353692.2-201ENST00000407054 335 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 MIR1250-201ENST00000408098 113 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC105402.1-201ENST00000413336 545 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 BX682237.1-201ENST00000415016 335 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXA3P55318 HSPD1P21-201ENST00000436541 245 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC023512.1-201ENST00000444513 499 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 CYCSP35-201ENST00000451978 304 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AL035407.2-201ENST00000454090 378 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 RPS29P12-201ENST00000460178 152 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXA3P55318 RN7SL385P-201ENST00000468873 276 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC087879.1-201ENST00000474343 374 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 RPS29P2-201ENST00000479278 136 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 AC110794.1-201ENST00000505816 425 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 HMGN1P15-201ENST00000513870 295 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 SNORA9.3-201ENST00000516383 129 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AP002812.4-201ENST00000532139 286 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.19□□□□□ -2.06
FOXA3P55318 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA3P55318 AC090695.1-201ENST00000561269 1222 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 AC136624.4-201ENST00000573044 370 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 AC019159.1-201ENST00000605094 187 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA3P55318 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA3P55318 AL110115.1-201ENST00000614396 364 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 AC009039.2-201ENST00000624524 529 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA3P55318 AC006378.2-201ENST00000623178 2476 ntBASIC2.19□□□□□ -2.06
FOXA3P55318 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
FOXA3P55318 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
FOXA3P55318 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
FOXA3P55318 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA3P55318 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.18□□□□□ -2.06
FOXA3P55318 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.18□□□□□ -2.06
FOXA3P55318 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
FOXA3P55318 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.18□□□□□ -2.06
FOXA3P55318 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA3P55318 RNU6-673P-201ENST00000365084 104 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 SNORD21-201ENST00000383953 95 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 MIR218-2-201ENST00000385006 110 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXA3P55318 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.18□□□□□ -2.06
FOXA3P55318 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA3P55318 RPS7P2-201ENST00000435134 607 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 snoU13.7-201ENST00000459220 104 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 RPL21P10-201ENST00000463521 490 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AC008155.2-201ENST00000464337 397 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 SYPL1P1-201ENST00000473622 768 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms