Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MRPL50P4-201ENST00000446432 475 ntBASIC4.21□□□□□ -1.74
CUX1P39880 AC133134.1-201ENST00000466800 359 ntBASIC4.21□□□□□ -1.74
CUX1P39880 RPL23AP14-201ENST00000468281 468 ntBASIC4.21□□□□□ -1.74
CUX1P39880 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.21□□□□□ -1.74
CUX1P39880 GAPDHP39-201ENST00000481866 979 ntBASIC4.21□□□□□ -1.74
CUX1P39880 KCTD9P5-201ENST00000504141 1170 ntBASIC4.21□□□□□ -1.74
CUX1P39880 SNORA31.1-201ENST00000515993 133 ntBASIC4.21□□□□□ -1.74
CUX1P39880 SNORA31.5-201ENST00000516190 133 ntBASIC4.21□□□□□ -1.74
CUX1P39880 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.21□□□□□ -1.74
CUX1P39880 AC025754.2-201ENST00000606491 432 ntBASIC4.21□□□□□ -1.74
CUX1P39880 AL354950.1-201ENST00000614150 568 ntBASIC4.21□□□□□ -1.74
CUX1P39880 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CUX1P39880 WARS-244ENST00000627608 123 ntTSL 5 BASIC4.21□□□□□ -1.74
CUX1P39880 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC4.2□□□□□ -1.74
CUX1P39880 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CUX1P39880 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CUX1P39880 MTND5P6-201ENST00000422338 1798 ntBASIC4.2□□□□□ -1.74
CUX1P39880 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CUX1P39880 CYCSP45-201ENST00000402289 315 ntBASIC4.2□□□□□ -1.74
CUX1P39880 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.2□□□□□ -1.74
CUX1P39880 AC008716.1-201ENST00000511084 513 ntBASIC4.2□□□□□ -1.74
CUX1P39880 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.2□□□□□ -1.74
CUX1P39880 AP000857.1-201ENST00000532151 543 ntBASIC4.2□□□□□ -1.74
CUX1P39880 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.2□□□□□ -1.74
CUX1P39880 AC009063.1-201ENST00000563342 702 ntBASIC4.2□□□□□ -1.74
CUX1P39880 CRYM-AS1-204ENST00000637983 556 ntBASIC4.2□□□□□ -1.74
CUX1P39880 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CUX1P39880 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CUX1P39880 MIR708-201ENST00000390708 88 ntBASIC4.19□□□□□ -1.74
CUX1P39880 AC069218.2-201ENST00000411665 344 ntBASIC4.19□□□□□ -1.74
CUX1P39880 AL445213.1-201ENST00000412589 747 ntBASIC4.19□□□□□ -1.74
CUX1P39880 RPL7P12-201ENST00000446719 750 ntBASIC4.19□□□□□ -1.74
CUX1P39880 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.19□□□□□ -1.74
CUX1P39880 SEC11B-201ENST00000518383 499 ntBASIC4.19□□□□□ -1.74
CUX1P39880 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.19□□□□□ -1.74
CUX1P39880 AC019227.1-201ENST00000526902 510 ntBASIC4.19□□□□□ -1.74
CUX1P39880 AC009977.1-201ENST00000586015 570 ntBASIC4.19□□□□□ -1.74
CUX1P39880 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CUX1P39880 BMS1P7-201ENST00000602440 1052 ntBASIC4.19□□□□□ -1.74
CUX1P39880 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CUX1P39880 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
CUX1P39880 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.18□□□□□ -1.74
CUX1P39880 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.18□□□□□ -1.74
CUX1P39880 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.18□□□□□ -1.74
CUX1P39880 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.18□□□□□ -1.74
CUX1P39880 YWHAZP1-201ENST00000556286 722 ntBASIC4.18□□□□□ -1.74
CUX1P39880 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.18□□□□□ -1.74
CUX1P39880 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.18□□□□□ -1.74
CUX1P39880 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.18□□□□□ -1.74
CUX1P39880 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.18□□□□□ -1.74
CUX1P39880 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
CUX1P39880 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CUX1P39880 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
CUX1P39880 RNU1-100P-201ENST00000365255 165 ntBASIC4.17□□□□□ -1.74
CUX1P39880 AL137014.1-201ENST00000420490 1226 ntBASIC4.17□□□□□ -1.74
CUX1P39880 VN1R48P-201ENST00000448149 1036 ntBASIC4.17□□□□□ -1.74
CUX1P39880 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.17□□□□□ -1.74
CUX1P39880 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.17□□□□□ -1.74
CUX1P39880 AC103798.2-201ENST00000624292 632 ntBASIC4.17□□□□□ -1.74
CUX1P39880 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CUX1P39880 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 AL512633.1-201ENST00000399931 655 ntBASIC4.16□□□□□ -1.74
CUX1P39880 AL591806.2-201ENST00000433122 173 ntBASIC4.16□□□□□ -1.74
CUX1P39880 RPL9P32-201ENST00000464118 620 ntBASIC4.16□□□□□ -1.74
CUX1P39880 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.16□□□□□ -1.74
CUX1P39880 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 ANKRD18EP-201ENST00000405487 2632 ntBASIC4.16□□□□□ -1.74
CUX1P39880 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 AC004925.1-201ENST00000624256 2706 ntBASIC4.16□□□□□ -1.74
CUX1P39880 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CUX1P39880 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 AL024474.1-201ENST00000404655 591 ntBASIC4.16□□□□□ -1.74
CUX1P39880 AL590004.2-201ENST00000404787 371 ntBASIC4.16□□□□□ -1.74
CUX1P39880 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 AC008280.2-201ENST00000455473 307 ntBASIC4.16□□□□□ -1.74
CUX1P39880 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.16□□□□□ -1.74
CUX1P39880 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.16□□□□□ -1.74
CUX1P39880 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.16□□□□□ -1.74
CUX1P39880 ZNF72P-201ENST00000425869 1908 ntBASIC4.15□□□□□ -1.74
CUX1P39880 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.15□□□□□ -1.74
CUX1P39880 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CUX1P39880 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CUX1P39880 AC069528.2-201ENST00000624849 1991 ntBASIC4.15□□□□□ -1.74
CUX1P39880 SNORD114-1-201ENST00000362705 72 ntBASIC4.15□□□□□ -1.75
CUX1P39880 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CUX1P39880 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CUX1P39880 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.15□□□□□ -1.75
CUX1P39880 AL031736.2-201ENST00000426573 787 ntBASIC4.15□□□□□ -1.75
CUX1P39880 Z99127.2-201ENST00000441426 334 ntBASIC4.15□□□□□ -1.75
CUX1P39880 AC245517.2-201ENST00000442890 346 ntBASIC4.15□□□□□ -1.75
CUX1P39880 AC096638.1-201ENST00000444678 216 ntBASIC4.15□□□□□ -1.75
CUX1P39880 AC092436.1-201ENST00000506450 503 ntBASIC4.15□□□□□ -1.75
CUX1P39880 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.15□□□□□ -1.75
CUX1P39880 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.15□□□□□ -1.75
CUX1P39880 MIR4644-201ENST00000579929 84 ntBASIC4.15□□□□□ -1.75
CUX1P39880 NTAN1P1-201ENST00000603150 646 ntBASIC4.15□□□□□ -1.75
CUX1P39880 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.15□□□□□ -1.75
CUX1P39880 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CUX1P39880 TTC39DP-201ENST00000416781 1688 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms